Datasets

This dataset contains delineations of the ventromedial tract of the Stria terminalis (VTM amygdala), external fiber bundle associated with the amygdala complex, in the individual cytoarchitectonic sections of the BigBrain. This fiber bundle was delineated on the basis of its topographic location in relation to the cytoarchitectonic subdivisions of the amygdala in the high-resolution histological sections (at 1-micron) of the BigBrain dataset. [...]

This dataset contains cytoarchitectonic delineations of the distinct subdivisions (amygdalopiriform transition area (APir), amygdalohippocampal transition area, dorsal (AHid) and ventral part (AHiv), ventral cortical nucleus, dorsal (VCod), and ventral part (VCov)) of the superficial amygdaloid group (SF amygdala) in individual sections of the BigBrain. Delineations of the subdivisions were result of the cytoarchitectonic analysis of the SF amygdala in coronal histological sections at 1-micron resolution of the BigBrain dataset. [...]

This dataset contains delineations of the distinct fiber bundles (intermediate caudomedial fiber masses (icm) and Lamella medialis (lm)) of the internal medial fiber masses of the amygdala complex (MF amygdala) in the individual, cytoarchitectonic coronal sections of the BigBrain. These fiber bundles were delineated on the basis of their topographic location in relation to the cytoarchitectonic subdivisions of the amygdala complex in high-resolution histological sections (at 1-micron) of the BigBrain dataset. [...]

This dataset contains cytoarchitectonic maps of the distinct subdivisions (lateral nucleus (La), basolateral nucleus (Bl), basomedial nucleus (Bm) and paralaminar nucleus (Pl)) of the laterobasal amygdaloid group (LB amygdala) in individual sections of the BigBrain. Delineations of the subdivisions were result of the cytoarchitectonic analysis of the LB amygdala in coronal histological sections at 1-micron resolution of the BigBrain dataset. [...]

This dataset contains delineations of the distinct fiber bundles (intermediate orolateral fiber masses (iol), intermediate central fiber masses (ice), Lamella dorsalis (ld)) of the internal intermediate fiber masses of the amygdala complex (IF Amygdala) in the individual cytoarchitectonic sections the BigBrain. These fiber bundles were delineated on the basis of their topographic location in relation to the cytoarchitectonic subdivisions of the amygdala in high-resolution histological sections (at 1-micron) of the BigBrain dataset. [...]

This dataset contains cytoarchitectonic maps of the distinct subdivisions (central nucleus (Ce), medial nucleus (Me) and anterior amygdaloid area (AAA)) of the centromedial amygdaloid group (CM amygdala) in individual sections of the BigBrain. Delineations of these subdivisions were result of the cytoarchitectonic analysis of the CM amygdala in coronal histological sections at 1-micron resolution of the BigBrain dataset. [...]

This dataset contains cytoarchitectonic maps of the amygdalostriatal transition zone (AStr amygdala) in individual sections of the BigBrain. Delineations of the AStr amygdala were result of the cytoarchitectonic analysis of the structure in coronal histological sections at 1-micron resolution of the BigBrain dataset. [...]

This dataset contains automatically created detailed map of 13 cytoarchitectonic subdivisions of the amygdala and 6 fiber bundles in the BigBrain dataset. The mappings were created using Deep Convolutional Neural Networks based on Schiffer et al 2021, which were trained on delineations on at least every 15th section created based on Kedo et al 2018. [...]

This repository provides the data to replicate the results from: 'Fast data-driven computation and intuitive visualization of fiber orientation uncertainty in 3D-Polarized Light Imaging'. The dataset contains 20 folders for the data of 20 brain sections (XX.zip). [...]

BigBrain is a publicly available 3D model of the human brain at 20 micron isotropic resolution, reconstructed from 7404 histological tissue sections that have been stained for cell bodies. This dataset contains profiles of the staining intensities, sampled at surface positions across the complete isocortex, ranging from the pial surface to the gray/white matter boundary. [...]