guest ::
| Home > Publications database > EnzymeML: seamless data flow and modeling of enzymatic data > print |
| 001 | 1002265 | ||
| 005 | 20230929112514.0 | ||
| 024 | 7 | _ | |a 10.1038/s41592-022-01763-1 |2 doi |
| 024 | 7 | _ | |a 1548-7091 |2 ISSN |
| 024 | 7 | _ | |a 1548-7105 |2 ISSN |
| 024 | 7 | _ | |a 36759590 |2 pmid |
| 024 | 7 | _ | |a WOS:000931967700001 |2 WOS |
| 037 | _ | _ | |a FZJ-2023-01247 |
| 082 | _ | _ | |a 610 |
| 100 | 1 | _ | |a Lauterbach, Simone |0 P:(DE-HGF)0 |b 0 |
| 245 | _ | _ | |a EnzymeML: seamless data flow and modeling of enzymatic data |
| 260 | _ | _ | |a London [u.a.] |c 2023 |b Nature Publishing Group |
| 336 | 7 | _ | |a article |2 DRIVER |
| 336 | 7 | _ | |a Output Types/Journal article |2 DataCite |
| 336 | 7 | _ | |a Journal Article |b journal |m journal |0 PUB:(DE-HGF)16 |s 1692271354_31794 |2 PUB:(DE-HGF) |
| 336 | 7 | _ | |a ARTICLE |2 BibTeX |
| 336 | 7 | _ | |a JOURNAL_ARTICLE |2 ORCID |
| 336 | 7 | _ | |a Journal Article |0 0 |2 EndNote |
| 520 | _ | _ | |a The design of biocatalytic reaction systems is highly complex owing to the dependency of the estimated kinetic parameters on the enzyme, the reaction conditions, and the modeling method. Consequently, reproducibility of enzymatic experiments and reusability of enzymatic data are challenging. We developed the XML-based markup language EnzymeML to enable storage and exchange of enzymatic data such as reaction conditions, the time course of the substrate and the product, kinetic parameters and the kinetic model, thus making enzymatic data findable, accessible, interoperable and reusable (FAIR). The feasibility and usefulness of the EnzymeML toolbox is demonstrated in six scenarios, for which data and metadata of different enzymatic reactions are collected and analyzed. EnzymeML serves as a seamless communication channel between experimental platforms, electronic lab notebooks, tools for modeling of enzyme kinetics, publication platforms and enzymatic reaction databases. EnzymeML is open and transparent, and invites the community to contribute. All documents and codes are freely available at https://enzymeml.org. |
| 536 | _ | _ | |a 2171 - Biological and environmental resources for sustainable use (POF4-217) |0 G:(DE-HGF)POF4-2171 |c POF4-217 |f POF IV |x 0 |
| 588 | _ | _ | |a Dataset connected to CrossRef, Journals: juser.fz-juelich.de |
| 700 | 1 | _ | |a Dienhart, Hannah |0 P:(DE-HGF)0 |b 1 |
| 700 | 1 | _ | |a Range, Jan |0 P:(DE-HGF)0 |b 2 |
| 700 | 1 | _ | |a Malzacher, Stephan |b 3 |
| 700 | 1 | _ | |a Spöring, Jan-Dirk |0 P:(DE-Juel1)178052 |b 4 |
| 700 | 1 | _ | |a Rother, Dörte |0 P:(DE-Juel1)144643 |b 5 |
| 700 | 1 | _ | |a Pinto, Maria Filipa |0 0000-0002-6337-3459 |b 6 |
| 700 | 1 | _ | |a Martins, Pedro |0 P:(DE-HGF)0 |b 7 |
| 700 | 1 | _ | |a Lagerman, Colton E. |0 P:(DE-HGF)0 |b 8 |
| 700 | 1 | _ | |a Bommarius, Andreas S. |0 0000-0003-4658-1675 |b 9 |
| 700 | 1 | _ | |a Høst, Amalie Vang |b 10 |
| 700 | 1 | _ | |a Woodley, John M. |0 0000-0002-7976-2483 |b 11 |
| 700 | 1 | _ | |a Ngubane, Sandile |0 0000-0003-4930-4526 |b 12 |
| 700 | 1 | _ | |a Kudanga, Tukayi |0 0000-0003-0958-9846 |b 13 |
| 700 | 1 | _ | |a Bergmann, Frank T. |0 0000-0001-5553-4702 |b 14 |
| 700 | 1 | _ | |a Rohwer, Johann M. |0 0000-0001-6288-8904 |b 15 |
| 700 | 1 | _ | |a Iglezakis, Dorothea |0 0000-0002-8524-0569 |b 16 |
| 700 | 1 | _ | |a Weidemann, Andreas |0 P:(DE-HGF)0 |b 17 |
| 700 | 1 | _ | |a Wittig, Ulrike |0 0000-0002-9077-5664 |b 18 |
| 700 | 1 | _ | |a Kettner, Carsten |0 0000-0002-8697-6842 |b 19 |
| 700 | 1 | _ | |a Swainston, Neil |0 P:(DE-HGF)0 |b 20 |
| 700 | 1 | _ | |a Schnell, Santiago |0 0000-0002-9477-3914 |b 21 |
| 700 | 1 | _ | |a Pleiss, Jürgen |0 0000-0003-1045-8202 |b 22 |e Corresponding author |
| 773 | _ | _ | |a 10.1038/s41592-022-01763-1 |0 PERI:(DE-600)2163081-1 |p 400-402 |t Nature methods |v 20 |y 2023 |x 1548-7091 |
| 856 | 4 | _ | |u https://juser.fz-juelich.de/record/1002265/files/s41592-022-01763-1.pdf |y Restricted |
| 909 | C | O | |o oai:juser.fz-juelich.de:1002265 |p VDB |
| 910 | 1 | _ | |a Forschungszentrum Jülich |0 I:(DE-588b)5008462-8 |k FZJ |b 5 |6 P:(DE-Juel1)144643 |
| 913 | 1 | _ | |a DE-HGF |b Forschungsbereich Erde und Umwelt |l Erde im Wandel – Unsere Zukunft nachhaltig gestalten |1 G:(DE-HGF)POF4-210 |0 G:(DE-HGF)POF4-217 |3 G:(DE-HGF)POF4 |2 G:(DE-HGF)POF4-200 |4 G:(DE-HGF)POF |v Für eine nachhaltige Bio-Ökonomie – von Ressourcen zu Produkten |9 G:(DE-HGF)POF4-2171 |x 0 |
| 914 | 1 | _ | |y 2023 |
| 915 | _ | _ | |a DEAL Nature |0 StatID:(DE-HGF)3003 |2 StatID |d 2022-11-17 |w ger |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)1190 |2 StatID |b Biological Abstracts |d 2022-11-17 |
| 915 | _ | _ | |a WoS |0 StatID:(DE-HGF)0113 |2 StatID |b Science Citation Index Expanded |d 2022-11-17 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0160 |2 StatID |b Essential Science Indicators |d 2022-11-17 |
| 915 | _ | _ | |a Nationallizenz |0 StatID:(DE-HGF)0420 |2 StatID |d 2023-08-29 |w ger |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0200 |2 StatID |b SCOPUS |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0300 |2 StatID |b Medline |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0199 |2 StatID |b Clarivate Analytics Master Journal List |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)1050 |2 StatID |b BIOSIS Previews |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0150 |2 StatID |b Web of Science Core Collection |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)1030 |2 StatID |b Current Contents - Life Sciences |d 2023-08-29 |
| 915 | _ | _ | |a JCR |0 StatID:(DE-HGF)0100 |2 StatID |b NAT METHODS : 2022 |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0600 |2 StatID |b Ebsco Academic Search |d 2023-08-29 |
| 915 | _ | _ | |a Peer Review |0 StatID:(DE-HGF)0030 |2 StatID |b ASC |d 2023-08-29 |
| 915 | _ | _ | |a IF >= 40 |0 StatID:(DE-HGF)9940 |2 StatID |b NAT METHODS : 2022 |d 2023-08-29 |
| 920 | 1 | _ | |0 I:(DE-Juel1)IBG-1-20101118 |k IBG-1 |l Biotechnologie |x 0 |
| 980 | _ | _ | |a journal |
| 980 | _ | _ | |a VDB |
| 980 | _ | _ | |a I:(DE-Juel1)IBG-1-20101118 |
| 980 | _ | _ | |a UNRESTRICTED |
| Library | Collection | CLSMajor | CLSMinor | Language | Author |
|---|