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@ARTICLE{Gutzen:1006775,
author = {Gutzen, Robin and De Bonis, Giulia and De Luca, Chiara and
Pastorelli, Elena and Capone, Cristiano and Mascaro, Anna
Letizia Allegra and Resta, Francesco and Manasanch, Arnau
and Pavone, Francesco Saverio and Sanchez-Vives, Maria V.
and Mattia, Maurizio and Grün, Sonja and Paolucci, Pier
Stanislao and Denker, Michael},
title = {{C}omparing apples to apples -- {U}sing a modular and
adaptable analysis pipeline to compare slow cerebral rhythms
across heterogeneous datasets},
publisher = {arXiv},
reportid = {FZJ-2023-01831},
year = {2022},
abstract = {Neuroscience is moving towards a more integrative
discipline, where understanding brain function requires
consolidating the accumulated evidence seen across
experiments, species, and measurement techniques. A
remaining challenge on that path is integrating such
heterogeneous data into analysis workflows such that
consistent and comparable conclusions can be distilled as an
experimental basis for models and theories. Here, we propose
a solution in the context of slow wave activity (< 1 Hz),
which occurs during unconscious brain states like sleep and
general anesthesia, and is observed across diverse
experimental approaches. We address the issue of integrating
and comparing heterogeneous data by conceptualizing a
general pipeline design that is adaptable to a variety of
inputs and applications. Furthermore, we present the
Collaborative Brain Wave Analysis Pipeline (Cobrawap) as a
concrete, reusable software implementation to perform broad,
detailed, and rigorous comparisons of slow wave
characteristics across multiple, openly available ECoG and
calcium imaging datasets.},
keywords = {Neurons and Cognition (q-bio.NC) (Other) / Quantitative
Methods (q-bio.QM) (Other) / FOS: Biological sciences
(Other)},
cin = {INM-6 / IAS-6 / INM-10},
cid = {I:(DE-Juel1)INM-6-20090406 / I:(DE-Juel1)IAS-6-20130828 /
I:(DE-Juel1)INM-10-20170113},
pnm = {5235 - Digitization of Neuroscience and User-Community
Building (POF4-523) / HBP SGA2 - Human Brain Project
Specific Grant Agreement 2 (785907) / HBP SGA3 - Human Brain
Project Specific Grant Agreement 3 (945539) / Algorithms of
Adaptive Behavior and their Neuronal Implementation in
Health and Disease (iBehave-20220812)},
pid = {G:(DE-HGF)POF4-5235 / G:(EU-Grant)785907 /
G:(EU-Grant)945539 / G:(DE-Juel-1)iBehave-20220812},
typ = {PUB:(DE-HGF)25},
doi = {10.48550/arXiv.2211.08527},
url = {https://juser.fz-juelich.de/record/1006775},
}