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@ARTICLE{Giraud:1014991,
      author       = {Giraud, Mona and Le Gall, Samuel and Harings, Moritz and
                      Javaux, Mathieu and Leitner, Daniel and Meunier, Félicien
                      and Rothfuss, Youri and van Dusschoten, Dagmar and
                      Vanderborght, Jan and Vereecken, Harry and Lobet, Guillaume
                      and Schnepf, Andrea},
      title        = {{CP}lant{B}ox: a fully coupled modelling platform for the
                      water and carbon fluxes in the soil–plant–atmosphere
                      continuum},
      journal      = {In silico plants},
      volume       = {5},
      number       = {2},
      issn         = {2517-5025},
      address      = {[Oxford]},
      publisher    = {Oxford University Press},
      reportid     = {FZJ-2023-03527},
      pages        = {diad009},
      year         = {2023},
      abstract     = {A plant’s development is strongly linked to the water and
                      carbon flows in the soil–plant–atmosphere continuum.
                      Expected climate shifts will alter the water and carbon
                      cycles and will affect plant phenotypes. Comprehensive
                      models that simulate mechanistically and dynamically the
                      feedback loops between a plant’s three-dimensional
                      development and the water and carbon flows are useful tools
                      to evaluate the sustainability of
                      genotype–environment–management combinations which do
                      not yet exist. In this study, we present the latest version
                      of the open-source three-dimensional Functional–Structural
                      Plant Model CPlantBox with PiafMunch and DuMux coupling.
                      This new implementation can be used to study the
                      interactions between known or hypothetical processes at the
                      plant scale. We simulated semi-mechanistically the
                      development of generic C3 monocots from 10 to 25 days after
                      sowing and undergoing an atmospheric dry spell of 1 week (no
                      precipitation). We compared the results for dry spells
                      starting on different days (Day 11 or 18) against a wetter
                      and colder baseline scenario. Compared with the baseline,
                      the dry spells led to a lower instantaneous water-use
                      efficiency. Moreover, the temperature-induced increased
                      enzymatic activity led to a higher maintenance respiration
                      which diminished the amount of sucrose available for growth.
                      Both of these effects were stronger for the later dry spell
                      compared with the early dry spell. We could thus use
                      CPlantBox to simulate diverging emerging processes (like
                      carbon partitioning) defining the plants’ phenotypic
                      plasticity response to their environment. The model remains
                      to be validated against independent observations of the
                      soil–plant–atmosphere continuum.},
      cin          = {IBG-3},
      ddc          = {004},
      cid          = {I:(DE-Juel1)IBG-3-20101118},
      pnm          = {2173 - Agro-biogeosystems: controls, feedbacks and impact
                      (POF4-217)},
      pid          = {G:(DE-HGF)POF4-2173},
      typ          = {PUB:(DE-HGF)16},
      UT           = {WOS:001068599000001},
      doi          = {10.1093/insilicoplants/diad009},
      url          = {https://juser.fz-juelich.de/record/1014991},
}