Recent Publications

All known publications ...
Download: BibTeX | EndNote XML,  Text | RIS | 

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Talk (non-conference) (Invited) Bazarova, A. (Corresponding author)FZJ*
Multi-modal integration for biological tasks: perks, caveats and applications
2026Systems Biology Lecture Series, MDC-BIMSBBerlin, MDC-BIMSB, Germany, 21 Jan 20262026-01-21 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Flöge, K. ; Udayakumar, S. ; Sommer, J. ; Piraud, M. ; Kesselheim, S.FZJ* ; Fortuin, V. ; Günnemann, S. ; van der Weg, K. J. ; Gohlke, H.FZJ* ; Merdivan, E. ; Bazarova, A. (Corresponding author)FZJ*
OneProt: Towards multi-modal protein foundation models via latent space alignment of sequence, structure, binding sites and text encoders
PLoS Computational Biology 21(11), e1013679 (2025) [10.1371/journal.pcbi.1013679]2025   Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Ürel, H. ; Benassou, S.FZJ* ; Marti, H. ; Reska, T. ; Sauerborn, E. ; Pinheiro Alves De Souza, Y. ; Perlas, A. ; Rayo, E. ; Biggel, M. ; Kesselheim, S.FZJ* ; Borel, N. ; Martin, E. J. ; Venegas, C. B. ; Schloter, M. ; Schröder, K. ; Mittelstrass, J. ; Prospero, S. ; Ferguson, J. M. ; Urban, L. (Corresponding author)
Nanopore- and AI-empowered microbial viability inference
GigaScience 14, giaf100 (2025) [10.1093/gigascience/giaf100]2025   Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint Khalfaoui, I.FZJ* ; Kesselheim, S.FZJ*
Polynomial, trigonometric, and tropical activations
arXiv (2025)2025   Files  Fulltext by arXiv.org BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint Filatov, O.FZJ* ; Wang, J.FZJ* ; Ebert, J.FZJ* ; Kesselheim, S.FZJ*
Optimal Scaling Needs Optimal Norm
arXiv (2025)2025   Files  Fulltext by arXiv.org BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint Kelling, J. ; Bolea, V. ; Bussmann, M. ; Checkervarty, A. ; Debus, A. ; Ebert, J.FZJ* ; Eisenhauer, G. ; Gutta, V. ; Kesselheim, S.FZJ* ; Klasky, S. ; Pandit, V. ; Pausch, R. ; Podhorszki, N. ; Poschel, F. ; Rogers, D. ; Rustamov, J. ; Schmerler, S. ; Schramm, U. ; Steiniger, K. ; Widera, R. ; Willmann, A. ; Chandrasekaran, S.
The Artificial Scientist -- in-transit Machine Learning of Plasma Simulations
arXiv (2025) [10.48550/ARXIV.2501.03383]2025   Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (Other) Piroozeh, Z. (Corresponding author)FZJ* ; Akerman, I. ; Kesselheim, S.FZJ* ; Kalinina, O. ; Bazarova, A.FZJ*
Interpretable prediction of DNA replication origins in S. cerevisiae using attention-based motif discovery
2025ICLR 2025, SingaporeSingapore, Singapore, 24 Apr 2025 - 28 Apr 20252025-04-242025-04-28 [10.34734/FZJ-2026-00952]   Files  Fulltext BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Lecture (Other) Bazarova, A. (Corresponding author)FZJ* ; Robledo, J. I. (Corresponding author)FZJ* ; Kesselheim, S. (Corresponding author)FZJ*
Introduction to Simulation Based Inference: enhancing synthetic models with Artificial Intelligence
2025Lecture at (Karlsruhe, Germany), 2 Jun 2025 - 2 Jun 20252025-06-022025-06-02 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Lecture (Other) Bazarova, A. (Corresponding author)FZJ* ; Robledo, J. I. (Corresponding author)FZJ* ; Kesselheim, S. (Corresponding author)FZJ*
Simulation-Based Inference for Computational Biology: Integrating AI, Bayesian Modeling, and HPC
2025Lecture at ISCB-AFRICA ASBCB 2025 (Capetown, South Africa), 17 Apr 2025 - 17 Apr 20252025-04-172025-04-17 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Talk (non-conference) (Invited) Bazarova, A. (Corresponding author)FZJ*
AI for Biological Complexity: From Data-Rich Multimodal Models to Data-Scarce Simulation-Based Inference
2025Earlham Institute Seminar, NorwichNorwich, United Kingdom, 10 Dec 20262026-12-10 BibTeX | EndNote: XML, Text | RIS

All known publications ...
Download: BibTeX | EndNote XML,  Text | RIS |