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@INPROCEEDINGS{Schiffer:1018410,
author = {Schiffer, Christian and Amunts, Katrin and Dickscheid,
Timo},
title = {{T}he status quo of automated cytoarchitecture analysis:
{W}here are we, and where are we going?},
reportid = {FZJ-2023-04791},
year = {2023},
abstract = {Cytoarchitectonic brain maps provide a microstructural
reference for multi-modal human brain atlases, representing
important indicators for brain connectivity and function.
Cytoarchitectonic areas are defined by characteristic
microstructural cell distributions, including the size,
shape, type, orientation, and density of neurons, as well as
their distinct laminar and columnar arrangement.
High-resolution microscopic scans of histological human
brain sections enable identifying cytoarchitectonic brain
areas. Modern high-throughput microscopic scanners enable
large-scale image acquisition, resulting in petabyte-scale
microscopic imaging datasets that provide the foundation for
next-generation brain atlases. As established
cytoarchitectonic brain mapping methods based on statistical
image analysis do not scale to such large datasets, ongoing
research aims to develop methods for automatic
classification and characterization of cytoarchitecture
based on large amounts of high-resolution images.In this
presentation, we will give an overview of the current state
of automated cytoarchitecture analysis and provide an
outlook on future developments in the field. We will discuss
the roles, potentials, and challenges of supervised
learning, self-supervised representation learning, and
graph-based inference at whole-brain level in the context of
cytoarchitecture analysis. Finally, we will comment on the
potential impact of novel methods and technologies on the
field, including zero-shot learning, data-driven
cytoarchitectonic mapping, multi-modal latent space fusion,
and exascale computing.},
month = {Oct},
date = {2023-10-04},
organization = {7th BigBrain Workshop, Reykjavík
(Iceland), 4 Oct 2023 - 6 Oct 2023},
subtyp = {After Call},
cin = {INM-1},
cid = {I:(DE-Juel1)INM-1-20090406},
pnm = {5251 - Multilevel Brain Organization and Variability
(POF4-525) / 5254 - Neuroscientific Data Analytics and AI
(POF4-525) / HIBALL - Helmholtz International BigBrain
Analytics and Learning Laboratory (HIBALL) (InterLabs-0015)
/ Helmholtz AI - Helmholtz Artificial Intelligence
Coordination Unit – Local Unit FZJ (E.40401.62)},
pid = {G:(DE-HGF)POF4-5251 / G:(DE-HGF)POF4-5254 /
G:(DE-HGF)InterLabs-0015 / G:(DE-Juel-1)E.40401.62},
typ = {PUB:(DE-HGF)6},
url = {https://juser.fz-juelich.de/record/1018410},
}