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@ARTICLE{Willighagen:1020642,
author = {Willighagen, Egon L and Waagmeester, Andra and Spjuth, Ola
and Ansell, Peter and Williams, Antony J and Tkachenko,
Valery and Hastings, Janna and Chen, Bin and Wild, David J},
title = {{T}he {C}h{EMBL} database as linked open data},
journal = {Journal of cheminformatics},
volume = {5},
number = {1},
issn = {1758-2946},
address = {London},
publisher = {BioMed Central},
reportid = {FZJ-2024-00325},
pages = {23},
year = {2013},
abstract = {BackgroundMaking data available as Linked Data using
Resource Description Framework (RDF) promotes integration
with other web resources. RDF documents can natively link to
related data, and others can link back using Uniform
Resource Identifiers (URIs). RDF makes the data
machine-readable and uses extensible vocabularies for
additional information, making it easier to scale up
inference and data analysis.ResultsThis paper describes
recent developments in an ongoing project converting data
from the ChEMBL database into RDF triples. Relative to
earlier versions, this updated version of ChEMBL-RDF uses
recently introduced ontologies, including CHEMINF and CiTO;
exposes more information from the database; and is now
available as dereferencable, linked data. To demonstrate
these new features, we present novel use cases showing
further integration with other web resources, including
Bio2RDF, Chem2Bio2RDF, and ChemSpider, and showing the use
of standard ontologies for querying.ConclusionsWe have
illustrated the advantages of using open standards and
ontologies to link the ChEMBL database to other databases.
Using those links and the knowledge encoded in standards and
ontologies, the ChEMBL-RDF resource creates a foundation for
integrated semantic web cheminformatics applications, such
as the presented decision support.},
ddc = {540},
typ = {PUB:(DE-HGF)16},
doi = {10.1186/1758-2946-5-23},
url = {https://juser.fz-juelich.de/record/1020642},
}