001024531 001__ 1024531 001024531 005__ 20250203103128.0 001024531 0247_ $$2doi$$a10.1093/bioinformatics/btad294 001024531 0247_ $$2ISSN$$a0266-7061 001024531 0247_ $$2ISSN$$a1367-4803 001024531 0247_ $$2ISSN$$a1367-4811 001024531 0247_ $$2ISSN$$a1460-2059 001024531 0247_ $$2datacite_doi$$a10.34734/FZJ-2024-02218 001024531 0247_ $$2pmid$$a37137232 001024531 0247_ $$2WOS$$aWOS:000988604300005 001024531 037__ $$aFZJ-2024-02218 001024531 082__ $$a570 001024531 1001_ $$0P:(DE-Juel1)186965$$aRibeiro, Rui P$$b0 001024531 245__ $$apyGOMoDo: GPCRs modeling and docking with python 001024531 260__ $$aOxford$$bOxford Univ. Press$$c2023 001024531 3367_ $$2DRIVER$$aarticle 001024531 3367_ $$2DataCite$$aOutput Types/Journal article 001024531 3367_ $$0PUB:(DE-HGF)16$$2PUB:(DE-HGF)$$aJournal Article$$bjournal$$mjournal$$s1712643340_1788 001024531 3367_ $$2BibTeX$$aARTICLE 001024531 3367_ $$2ORCID$$aJOURNAL_ARTICLE 001024531 3367_ $$00$$2EndNote$$aJournal Article 001024531 520__ $$aMotivation: We present pyGOMoDo, a Python library to perform homology modeling and docking, specifically designed for human GPCRs.pyGOMoDo is a python wrap-up of the updated functionalities of GOMoDo web server (https://molsim.sci.univr.it/gomodo). It was developedhaving in mind its usage through Jupyter notebooks, where users can create their own protocols of modeling and docking of GPCRs. In this article, we focus on the internal structure and general capabilities of pyGOMoDO and on how it can be useful for carrying out structural biology studies of GPCRs.Results: The source code is freely available at https://github.com/rribeiro-sci/pygomodo under the Apache 2.0 license. Tutorial notebooks containing minimal working examples can be found at https://github.com/rribeiro-sci/pygomodo/tree/main/examples. 001024531 536__ $$0G:(DE-HGF)POF4-5241$$a5241 - Molecular Information Processing in Cellular Systems (POF4-524)$$cPOF4-524$$fPOF IV$$x0 001024531 588__ $$aDataset connected to CrossRef, Journals: juser.fz-juelich.de 001024531 7001_ $$0P:(DE-Juel1)165199$$aGiorgetti, A.$$b1$$eCorresponding author 001024531 773__ $$0PERI:(DE-600)1468345-3$$a10.1093/bioinformatics/btad294$$gVol. 39, no. 5, p. btad294$$n5$$pbtad294$$tBioinformatics$$v39$$x0266-7061$$y2023 001024531 8564_ $$uhttps://juser.fz-juelich.de/record/1024531/files/btad294.pdf$$yOpenAccess 001024531 8564_ $$uhttps://juser.fz-juelich.de/record/1024531/files/btad294.gif?subformat=icon$$xicon$$yOpenAccess 001024531 8564_ $$uhttps://juser.fz-juelich.de/record/1024531/files/btad294.jpg?subformat=icon-1440$$xicon-1440$$yOpenAccess 001024531 8564_ $$uhttps://juser.fz-juelich.de/record/1024531/files/btad294.jpg?subformat=icon-180$$xicon-180$$yOpenAccess 001024531 8564_ $$uhttps://juser.fz-juelich.de/record/1024531/files/btad294.jpg?subformat=icon-640$$xicon-640$$yOpenAccess 001024531 909CO $$ooai:juser.fz-juelich.de:1024531$$pdnbdelivery$$pdriver$$pVDB$$popen_access$$popenaire 001024531 9101_ $$0I:(DE-588b)5008462-8$$6P:(DE-Juel1)165199$$aForschungszentrum Jülich$$b1$$kFZJ 001024531 9131_ $$0G:(DE-HGF)POF4-524$$1G:(DE-HGF)POF4-520$$2G:(DE-HGF)POF4-500$$3G:(DE-HGF)POF4$$4G:(DE-HGF)POF$$9G:(DE-HGF)POF4-5241$$aDE-HGF$$bKey Technologies$$lNatural, Artificial and Cognitive Information Processing$$vMolecular and Cellular Information Processing$$x0 001024531 9141_ $$y2024 001024531 915__ $$0StatID:(DE-HGF)0200$$2StatID$$aDBCoverage$$bSCOPUS$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)0160$$2StatID$$aDBCoverage$$bEssential Science Indicators$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)1050$$2StatID$$aDBCoverage$$bBIOSIS Previews$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)1190$$2StatID$$aDBCoverage$$bBiological Abstracts$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)0600$$2StatID$$aDBCoverage$$bEbsco Academic Search$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)0100$$2StatID$$aJCR$$bBIOINFORMATICS : 2022$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)1030$$2StatID$$aDBCoverage$$bCurrent Contents - Life Sciences$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)0501$$2StatID$$aDBCoverage$$bDOAJ Seal$$d2023-07-11T10:36:43Z 001024531 915__ $$0StatID:(DE-HGF)0500$$2StatID$$aDBCoverage$$bDOAJ$$d2023-07-11T10:36:43Z 001024531 915__ $$0StatID:(DE-HGF)0113$$2StatID$$aWoS$$bScience Citation Index Expanded$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)0700$$2StatID$$aFees$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)0150$$2StatID$$aDBCoverage$$bWeb of Science Core Collection$$d2023-10-21 001024531 915__ $$0LIC:(DE-HGF)CCBY4$$2HGFVOC$$aCreative Commons Attribution CC BY 4.0 001024531 915__ $$0StatID:(DE-HGF)0510$$2StatID$$aOpenAccess 001024531 915__ $$0StatID:(DE-HGF)0030$$2StatID$$aPeer Review$$bASC$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)0561$$2StatID$$aArticle Processing Charges$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)9905$$2StatID$$aIF >= 5$$bBIOINFORMATICS : 2022$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)0300$$2StatID$$aDBCoverage$$bMedline$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)0320$$2StatID$$aDBCoverage$$bPubMed Central$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)0420$$2StatID$$aNationallizenz$$d2023-10-21$$wger 001024531 915__ $$0StatID:(DE-HGF)0199$$2StatID$$aDBCoverage$$bClarivate Analytics Master Journal List$$d2023-10-21 001024531 915__ $$0StatID:(DE-HGF)0030$$2StatID$$aPeer Review$$bDOAJ : Anonymous peer review$$d2023-07-11T10:36:43Z 001024531 920__ $$lyes 001024531 9201_ $$0I:(DE-Juel1)IAS-5-20120330$$kIAS-5$$lComputational Biomedicine$$x0 001024531 9201_ $$0I:(DE-Juel1)INM-9-20140121$$kINM-9$$lComputational Biomedicine$$x1 001024531 980__ $$ajournal 001024531 980__ $$aVDB 001024531 980__ $$aUNRESTRICTED 001024531 980__ $$aI:(DE-Juel1)IAS-5-20120330 001024531 980__ $$aI:(DE-Juel1)INM-9-20140121 001024531 9801_ $$aFullTexts