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001029557 1001_ $$00000-0002-1950-954X$$aPieri, Alice$$b0
001029557 245__ $$aTranscriptomic response to nitrogen availability reveals signatures of adaptive plasticity during tetraploid wheat domestication
001029557 260__ $$aRockville, Md.$$bSoc.$$c2024
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001029557 520__ $$aThe domestication of crops, coupled with agroecosystem development, is associated with major environmental changes and provides an ideal model of phenotypic plasticity. Here, we examined 32 genotypes of three tetraploid wheat (Triticum turgidum L.) subspecies, wild emmer, emmer, and durum wheat, which are representative of the key stages in the domestication of tetraploid wheat. We developed a pipeline that integrates RNA-Seq data and population genomics to assess gene expression plasticity and identify selection signatures under diverse nitrogen availability conditions. Our analysis revealed differing gene expression responses to nitrogen availability across primary (wild emmer to emmer) and secondary (emmer to durum wheat) domestication. Notably, nitrogen triggered the expression of twice as many genes in durum wheat compared to that in emmer and wild emmer. Unique selection signatures were identified at each stage: primary domestication mainly influenced genes related to biotic interactions, whereas secondary domestication affected genes related to amino acid metabolism, in particular lysine. Selection signatures were found in differentially expressed genes (DEGs), notably those associated with nitrogen metabolism, such as the gene encoding glutamate dehydrogenase (GDH). Overall, our study highlights the pivotal role of nitrogen availability in the domestication and adaptive responses of a major food crop, with varying effects across different traits and growth conditions.
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001029557 7001_ $$00000-0002-2880-5033$$aBeleggia, Romina$$b1$$eCorresponding author
001029557 7001_ $$0P:(DE-HGF)0$$aGioia, Tania$$b2
001029557 7001_ $$00000-0003-4856-1336$$aTong, Hao$$b3
001029557 7001_ $$00000-0003-3796-8587$$aDi Vittori, Valerio$$b4
001029557 7001_ $$00000-0003-0114-7314$$aFrascarelli, Giulia$$b5
001029557 7001_ $$00000-0002-2152-4634$$aBitocchi, Elena$$b6
001029557 7001_ $$00000-0002-1249-5165$$aNanni, Laura$$b7
001029557 7001_ $$00000-0002-1636-0719$$aBellucci, Elisa$$b8
001029557 7001_ $$0P:(DE-Juel1)143649$$aFiorani, Fabio$$b9
001029557 7001_ $$00000-0003-1704-2541$$aPecchioni, Nicola$$b10
001029557 7001_ $$00009-0005-3014-0869$$aMarzario, Stefania$$b11
001029557 7001_ $$00000-0003-2885-5468$$aDe Quattro, Concetta$$b12
001029557 7001_ $$00000-0003-1570-8370$$aLimongi, Antonina Rita$$b13
001029557 7001_ $$00000-0002-9573-0510$$aDe Vita, Pasquale$$b14
001029557 7001_ $$00000-0002-6101-1550$$aRossato, Marzia$$b15
001029557 7001_ $$0P:(DE-Juel1)129402$$aSchurr, Ulrich$$b16
001029557 7001_ $$00000-0002-2925-2258$$aDavid, Jacques L$$b17
001029557 7001_ $$00000-0003-2671-6763$$aNikoloski, Zoran$$b18
001029557 7001_ $$0P:(DE-HGF)0$$aPapa, Roberto$$b19$$eCorresponding author
001029557 773__ $$0PERI:(DE-600)2004373-9$$a10.1093/plcell/koae202$$gp. koae202$$n9$$p3809-3823$$tThe plant cell$$v36$$x1040-4651$$y2024
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