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@MISC{Dickscheid:1031456,
author = {Dickscheid, Timo and Bludau, Sebastian},
title = {{M}aking the multiscale organization of the human brain
accessible to reproducible workflows using siibra-python},
reportid = {FZJ-2024-05675},
year = {2024},
abstract = {Understanding the human brain requires access to
experimental data that capture relevant aspects of brain
organization across a broad range of scales and modalities,
and typically originate from a plethora of resources. To
make multimodal and multidimensional measures of brain
organization accessible, they need to be integrated into a
common reference framework and exposed via suitable software
interfaces. This tutorial will introduce participants to
siibra toolsuite, which provides access to a multilevel
atlas of the human brain built from “big data”. The
atlas integrates brain reference templates at different
spatial scales, complementary parcellation maps, and a wide
range of multimodal data features. It links macroanatomical
concepts and their inter-subject variability with
measurements of the microstructural composition and
intrinsic variance of brain regions, using cytoarchitectonic
maps as a reference, and integrating the BigBrain model as
microscopic reference template. The tool suite includes a
web-based 3D viewer (siibra-explorer) and a Python library
(siibra-python) to support a broad range of neuroscientific
use cases. It makes use of EBRAINS as a data sharing
platform and cloud infrastructure and implements interfaces
to other neuroscience resources. The focus of this tutorial
will be on building reproducible workflows with BigBrain
data using the siibra-python library.},
month = {Sep},
date = {2024-09-09},
organization = {8th BigBrain Workshop, Padua (Italy),
9 Sep 2024 - 11 Sep 2024},
subtyp = {Invited},
cin = {INM-1},
cid = {I:(DE-Juel1)INM-1-20090406},
pnm = {5251 - Multilevel Brain Organization and Variability
(POF4-525) / 5254 - Neuroscientific Data Analytics and AI
(POF4-525) / HIBALL - Helmholtz International BigBrain
Analytics and Learning Laboratory (HIBALL) (InterLabs-0015)
/ EBRAINS 2.0 - EBRAINS 2.0: A Research Infrastructure to
Advance Neuroscience and Brain Health (101147319) /
Helmholtz AI - Helmholtz Artificial Intelligence
Coordination Unit – Local Unit FZJ (E.40401.62)},
pid = {G:(DE-HGF)POF4-5251 / G:(DE-HGF)POF4-5254 /
G:(DE-HGF)InterLabs-0015 / G:(EU-Grant)101147319 /
G:(DE-Juel-1)E.40401.62},
typ = {PUB:(DE-HGF)17},
url = {https://juser.fz-juelich.de/record/1031456},
}