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@MISC{Bludau:1031527,
      author       = {Bludau, Sebastian and Lothmann, Kimberley and Thönnißen,
                      Julia},
      title        = {{U}sing the {EBRAINS} interactive atlas viewer to analyse
                      the brain},
      reportid     = {FZJ-2024-05722},
      year         = {2024},
      abstract     = {<b>Using the EBRAINS interactive atlas viewer to analyse
                      the brain</b><br>Kimberley Lothmann, Sebastian Bludau, Julia
                      Thönnißen<br><br><b>Using the atlas to analyse the brain
                      (part 1)</b><br>Understanding how the brain works is one of
                      the grand challenges in science and requires the integration
                      of huge amounts of heterogeneous and complex data. Numerous
                      research publications present experimental data at various
                      levels of granularity and describe a wide range of
                      structural and functional aspects of the brain. In this
                      context, reference atlases of the brain are important tools
                      for assigning location to data captured with the many
                      methods and instruments used to study the brain. With a new
                      generation of three-dimensional digital reference atlases,
                      new solutions for integrating and disseminating brain data
                      are being developed. During the talk, possibilities will be
                      shown to explore brain regions in an interactive 3D viewer,
                      as well as ways to spatially anchor your own volumetric data
                      in a high-resolution reference space. Furthermore, it will
                      be presented how to access linked multimodal data features
                      from the EBRAINS Knowledge Graph with published and freely
                      available tools. The steps and tools shown will be applied
                      in practice in a subsequent hands-on session "Browsing
                      reference atlases online (~30min).<br><br><b>Hands-on:
                      Browsing reference atlases online (Part2)</b><br>The first
                      level of HBP data integration is achieved by spatial mapping
                      of all data into a common anatomical reference atlas space.
                      This mapping can be semantic by use of specific atlas
                      structure names, or spatial by registration of image data to
                      a 3-D reference atlas template. The hands-on session, will
                      demonstrate the BigBrain dataset as reference brain
                      visualized using different viewer / interaction concepts.
                      I.e. the HBP Big Brain viewer; the HBP interactive atlas
                      viewer including different atlases and reference spaces; The
                      goal of the hands-on session is to provide basic skills to
                      view and download different brain maps along with their
                      metadata and matching data from different modalities using
                      the HBP interactive atlas viewer and the EBrains
                      KnowledgeGraph infrastructure.},
      month         = {Jun},
      date          = {2024-06-18},
      organization  = {The Julich-Brain Atlas at EBRAINS -
                       Introduction, Concepts and Hands-on
                       Sessions, online (Germany), 18 Jun 2024
                       - 18 Jun 2024},
      subtyp        = {Outreach},
      cin          = {INM-1},
      cid          = {I:(DE-Juel1)INM-1-20090406},
      pnm          = {5251 - Multilevel Brain Organization and Variability
                      (POF4-525) / EBRAINS 2.0 - EBRAINS 2.0: A Research
                      Infrastructure to Advance Neuroscience and Brain Health
                      (101147319) / HIBALL - Helmholtz International BigBrain
                      Analytics and Learning Laboratory (HIBALL) (InterLabs-0015)},
      pid          = {G:(DE-HGF)POF4-5251 / G:(EU-Grant)101147319 /
                      G:(DE-HGF)InterLabs-0015},
      typ          = {PUB:(DE-HGF)17},
      url          = {https://juser.fz-juelich.de/record/1031527},
}