TY  - GEN
AU  - Dickscheid, Timo
AU  - Lothmann, Kimberley
AU  - Simsek, Ahmet Nihat
AU  - Gui, Xiaoyun
TI  - Tutorial: The siibra toolsuit for accessing the EBRAINS human brain atlas
M1  - FZJ-2024-06488
PY  - 2024
AB  - iibra is a software tool suite implementing an openly accessible brain atlas framework which connects multimodal datasets from different resources to anatomical structures in reference spaces at different spatial scales. The tool suite is designed to address both interactive exploration through an interactive 3D web viewer (siibra-explorer) as well as integration into data analysis and simulation workflows with a comprehensive Python library (siibra-python). In this session, we first introduce the multidimensional concept of the atlas framework and explore some key features such as the BigBrain interactively. We then turn to concrete programming tutorials in Python. These include fetching brain region maps, accessing the BigBrain dataset, and extracting multimodal regional features such as cortical thicknesses, cell and neurotransmitter densities, gene expressions and connectivity data. We will finish with some concrete data analysis examples.
T2  - INM Retreat 2024
CY  - 19 Nov 2024 - 19 Nov 2024, Jülich (Germany)
Y2  - 19 Nov 2024 - 19 Nov 2024
M2  - Jülich, Germany
LB  - PUB:(DE-HGF)17
UR  - https://juser.fz-juelich.de/record/1033608
ER  -