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@MISC{Dickscheid:1033608,
      author       = {Dickscheid, Timo and Lothmann, Kimberley and Simsek, Ahmet
                      Nihat and Gui, Xiaoyun},
      title        = {{T}utorial: {T}he siibra toolsuit for accessing the
                      {EBRAINS} human brain atlas},
      reportid     = {FZJ-2024-06488},
      year         = {2024},
      abstract     = {iibra is a software tool suite implementing an openly
                      accessible brain atlas framework which connects multimodal
                      datasets from different resources to anatomical structures
                      in reference spaces at different spatial scales. The tool
                      suite is designed to address both interactive exploration
                      through an interactive 3D web viewer (siibra-explorer) as
                      well as integration into data analysis and simulation
                      workflows with a comprehensive Python library
                      (siibra-python). In this session, we first introduce the
                      multidimensional concept of the atlas framework and explore
                      some key features such as the BigBrain interactively. We
                      then turn to concrete programming tutorials in Python. These
                      include fetching brain region maps, accessing the BigBrain
                      dataset, and extracting multimodal regional features such as
                      cortical thicknesses, cell and neurotransmitter densities,
                      gene expressions and connectivity data. We will finish with
                      some concrete data analysis examples.},
      month         = {Nov},
      date          = {2024-11-19},
      organization  = {INM Retreat 2024, Jülich (Germany),
                       19 Nov 2024 - 19 Nov 2024},
      subtyp        = {Outreach},
      cin          = {INM-1},
      cid          = {I:(DE-Juel1)INM-1-20090406},
      pnm          = {5254 - Neuroscientific Data Analytics and AI (POF4-525)},
      pid          = {G:(DE-HGF)POF4-5254},
      typ          = {PUB:(DE-HGF)17},
      url          = {https://juser.fz-juelich.de/record/1033608},
}