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@ARTICLE{Beier:1046723,
      author       = {Beier, Sebastian and Bolger, Marie Elizabeth and
                      Chanvivattana, Yindee and Bolger, Anthony Michael and
                      Schmidt, Maximilian Heinrich-Wilhelm and Leelapon, Oranuch
                      and Rakmit, Rungroj and Changmai, Kulnida and Ruayreun,
                      Ratiporn and Srithundon, Sukanya and Totaiya, Duangjit and
                      Sitchanukrit, Boriphat and Usadel, Björn and Wongtiem,
                      Prapit and Amawan, Suwaluk and Wojciechowski, Tobias},
      title        = {{C}hromosome-level genome assemblies of {T}hai cassava
                      ecotypes ({M}anihot esculenta $\&$ {M}anihot glaziovii)},
      journal      = {Scientific data},
      volume       = {12},
      number       = {1},
      issn         = {2052-4436},
      address      = {London},
      publisher    = {Nature Publ. Group},
      reportid     = {FZJ-2025-03935},
      pages        = {1591},
      year         = {2025},
      abstract     = {Cassava is a vital staple crop, yet genomic resources for
                      diverse ecotypes, particularly from key regions, remain
                      limited. To address this, we generated high-quality genome
                      assemblies for nine Thai M. esculenta cultivars and one wild
                      relative, Manihot glaziovii. The sequencing strategy
                      combined Oxford Nanopore long reads for initial assembly
                      with Illumina short reads for polishing and quality
                      assessment. For five of the genotypes, extensive RNA-Seq
                      data from various tissues and developmental stages were also
                      produced to guide gene annotation. We provide detailed
                      technical validation of the ten genome assemblies, reporting
                      on key metrics of contiguity (N50s from 28.9 to 35.2 Mb),
                      completeness (Complete BUSCO scores from $95.69\%$ to
                      $99.21\%),$ and base-level accuracy (k-mer QV scores from
                      33.47 to 37.67). The final annotated assemblies and all raw
                      sequencing data have been deposited in public archives and
                      are readily accessible. These datasets represent a
                      significant expansion of the genomic toolkit for Asian
                      cassava, providing a foundational resource for future
                      genetic discovery, comparative genomics, and advanced
                      breeding applications.},
      cin          = {IBG-2 / IBG-4},
      ddc          = {500},
      cid          = {I:(DE-Juel1)IBG-2-20101118 / I:(DE-Juel1)IBG-4-20200403},
      pnm          = {2171 - Biological and environmental resources for
                      sustainable use (POF4-217) / Bioökonomie International
                      2015: CASSAVASTORe - Genetische und phänotypische Analysen
                      zur Verbesserung der Speicherwurzelentwicklung von Maniok
                      (031B0070)},
      pid          = {G:(DE-HGF)POF4-2171 / G:(BMBF)031B0070},
      typ          = {PUB:(DE-HGF)16},
      doi          = {10.1038/s41597-025-05998-3},
      url          = {https://juser.fz-juelich.de/record/1046723},
}