Contribution to a book FZJ-2026-03327

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All-atom MD simulations of amyloid–membrane interactions: Setup, execution, and analysis

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2026
Elsevier New York, NY [u.a.]

Structural Study of Amyloid-β / Bundschuh, Bastian F. ; : Elsevier, 2026, ; ISSN: 00766879 ; ISBN: 9780443428531 ; doi:10.1016/bs.mie.2026.01.031 New York, NY [u.a.] : Elsevier, Methods in Enzymology 729, 389 - 417 () [10.1016/bs.mie.2026.01.031]

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Abstract: Protein–membrane interactions are increasingly recognized as key factors in amyloid-related pathologies, where amyloid proteins associate with lipid bilayers in ways that influence aggregation pathways and cytotoxic effects. Molecular dynamics (MD) simulations have become essential tools for investigating the molecular mechanisms underlying these interactions. This chapter presents advanced methodologies for simulating amyloid–membrane systems, using a hexameric amyloid-β peptide barrel inserted into a neuronal membrane as an example, and provides practical guidance for system setup, simulation execution, and trajectory analysis.

Classification:

Contributing Institute(s):
  1. Strukturbiochemie (IBI-7)
Research Program(s):
  1. 5241 - Molecular Information Processing in Cellular Systems (POF4-524) (POF4-524)

Database coverage:
Medline ; SCOPUS
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 Record created 2026-07-08, last modified 2026-07-08



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