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@ARTICLE{Brunger:111909,
author = {Brunger, A.T. and Adams, P.D. and Fromme, P. and Fromme, R.
and Levitt, M. and Schröder, G.F.},
title = {{I}mproving the accuracy of macromolecular structure
refinement at 7 Å resolution},
journal = {Structure},
volume = {20},
issn = {0969-2126},
address = {London [u.a.]},
publisher = {Elsevier Science},
reportid = {PreJuSER-111909},
pages = {957 - 966},
year = {2012},
note = {Record converted from VDB: 16.11.2012},
abstract = {In X-ray crystallography, molecular replacement
and subsequent refinement is challenging at low resolution.
We compared refinement methods using synchrotron diffraction
data of photosystem I at 7.4 Å resolution, starting from
different initial models with increasing deviations from the
known high-resolution structure. Standard refinement spoiled
the initial models, moving them further away from the true
structure and leading to high R(free)-values. In contrast,
DEN refinement improved even the most distant starting model
as judged by R(free), atomic root-mean-square differences to
the true structure, significance of features not included in
the initial model, and connectivity of electron density. The
best protocol was DEN refinement with initial segmented
rigid-body refinement. For the most distant initial model,
the fraction of atoms within 2 Å of the true structure
improved from $24\%$ to $60\%.$ We also found a significant
correlation between R(free) values and the accuracy of the
model, suggesting that R(free) is useful even at low
resolution.},
keywords = {Bacterial Proteins: chemistry / Crystallography, X-Ray /
Models, Molecular / Photosystem I Protein Complex: chemistry
/ Protein Structure, Secondary / Protein Structure, Tertiary
/ Software / Structural Homology, Protein / Bacterial
Proteins (NLM Chemicals) / Photosystem I Protein Complex
(NLM Chemicals)},
cin = {ICS-6},
ddc = {570},
cid = {I:(DE-Juel1)ICS-6-20110106},
pnm = {Funktion und Dysfunktion des Nervensystems / BioSoft:
Makromolekulare Systeme und biologische
Informationsverarbeitung},
pid = {G:(DE-Juel1)FUEK409 / G:(DE-Juel1)FUEK505},
typ = {PUB:(DE-HGF)16},
pubmed = {pmid:22681901},
pmc = {pmc:PMC3380535},
UT = {WOS:000305094500004},
doi = {10.1016/j.str.2012.04.020},
url = {https://juser.fz-juelich.de/record/111909},
}