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@INPROCEEDINGS{Kunkel:137379,
author = {Kunkel, Susanne and Schmidt, Maximilian and Eppler, Jochen
Martin and Igarashi, Jun and Masumoto, Gen and Fukai, Tomoki
and Ishii, Shin and Plesser, Hans Ekkehard and Morrison,
Abigail and Diesmann, Markus and Helias, Moritz},
title = {{S}upercomputers ready for use as discovery machines for
neuroscience},
reportid = {FZJ-2013-03826},
year = {2013},
abstract = {NEST is a widely used tool to simulate biological spiking
neural networks [1]. The simulator is subject tocontinuous
development, which is driven by the requirements of the
current neuroscientific questions. Atpresent, a major part
of the software development focuses on the improvement of
the simulator'sfundamental data structures in order to
enable brain-scale simulations on supercomputers such as
theBlue Gene system in Jülich and the K computer in Kobe.
Based on our memory-usage model [2], weredesigned the
neuronal and the connection infrastructure of NEST such that
networks of $10^8$ neuronsand $10^12$ synapses can be
simulated on the K computer [3]. These improvements reduce
the memoryfootprint without compromising on the simulator's
general usability and user interface. Here, we describethe
recent technological advances which enable NEST to achieve
high performance and good scaling ofnetwork setup and
simulation on the K computer and on the Blue Gene system. We
demonstrate that theusability of these machines for network
simulations has become comparable to running simulations on
asingle PC.},
month = {Mar},
date = {2013-03-13},
organization = {10th Meeting of the German
Neuroscience Society, Goettingen
(Germany), 13 Mar 2013 - 18 Mar 2013},
subtyp = {After Call},
cin = {INM-6 / IAS-6 / JSC},
cid = {I:(DE-Juel1)INM-6-20090406 / I:(DE-Juel1)IAS-6-20130828 /
I:(DE-Juel1)JSC-20090406},
pnm = {331 - Signalling Pathways and Mechanisms in the Nervous
System (POF2-331) / 411 - Computational Science and
Mathematical Methods (POF2-411) / Brain-Scale Simulations
$(jinb33_20121101)$ / HASB - Helmholtz Alliance on Systems
Biology (HGF-SystemsBiology) / BTN-Peta - The
Next-Generation Integrated Simulation of Living Matter
(BTN-Peta-2008-2012) / BRAINSCALES - Brain-inspired
multiscale computation in neuromorphic hybrid systems
(269921) / SMHB - Supercomputing and Modelling for the Human
Brain (HGF-SMHB-2013-2017) / W2Morrison - W2/W3
Professorinnen Programm der Helmholtzgemeinschaft
(B1175.01.12) / SLNS - SimLab Neuroscience (Helmholtz-SLNS)},
pid = {G:(DE-HGF)POF2-331 / G:(DE-HGF)POF2-411 /
$G:(DE-Juel1)jinb33_20121101$ /
G:(DE-Juel1)HGF-SystemsBiology /
G:(DE-Juel1)BTN-Peta-2008-2012 / G:(EU-Grant)269921 /
G:(DE-Juel1)HGF-SMHB-2013-2017 / G:(DE-HGF)B1175.01.12 /
G:(DE-Juel1)Helmholtz-SLNS},
typ = {PUB:(DE-HGF)24},
url = {https://juser.fz-juelich.de/record/137379},
}