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@INPROCEEDINGS{Eppler:155353,
author = {Eppler, Jochen Martin and Kunkel, Susanne and Helias,
Moritz and Zaytsev, Yury and Plesser, Hans Ekkehard and
Gewaltig, Marc-Oliver and Morrison, Abigail and Diesmann,
Markus},
title = {20 years of {NEST}: a mature brain simulator},
reportid = {FZJ-2014-04526},
year = {2013},
abstract = {imulators have been developed, each specialized on one or
few spatial and temporal scales [1]. But thereliable and
reproducible simulation of such complex systems as the brain
is a very demanding challenge.Thus, the Computational
Neuroscience community concentrated on a few reliable and
widely used simula-tion tools in recent years. This
concentration was not least the result of a series of
large-scale EU fundedprojects, such as FACETS, BrainScaleS
and the recently announced Human Brain Project.From its
humble beginnings as a PhD-student project 20 years ago, the
Neural Simulation Tool NEST [2]saw its first incarnation as
the SYNOD simulator in 1995 [3]. By tightly coupling
software development withcomputational neuroscience research
[4], simulator technology evolved steadily, facilitating new
scientificinsight at almost every step. Some key examples
were parallelization [5,6], exact integration of
modelequations [7], precise spike times in a time-driven
simulator [8,9], spike-timing dependent [10] and
neuro-modulated plasticity [11], and a Topology module for
spatially structured networks [12]. Streamlined
datastructures [13] allow NEST to efficiently exploit the
capabilities of some of the largest computers on Earth
forsimulations on the brain scale [14]. Systematic quality
assurance through testsuites [15] and continuousintegration
technology [16] ensure simulator reliability. With a
user-friendly Python-based interface [17],integration with
PyNN [18] for simulator-independent scripting and MUSIC
support [19] for integrated multi-scale simulation, NEST is
a powerful simulation tool for brain-scale simulations
today. References[1] Brette et al (2007) Simulation of
networks of spiking neurons: A review of tools and
strategies. J Comput Neurosci.[2] Gewaltig $\&$ Diesmann
(2007) NEST (NEural Simulation Tool). Scholarpedia.[3]
Diesmann et al. (1995) SYNOD: an Environment for Neural
Systems Simulations. The Weizmann Institute of Science.[4]
Kunkel et al. (2010) NEST: Science-driven development of
neuronal network simulation software.[5] Morrison et al.
(2005) Advancing the boundaries of high connectivity network
simulation with distributed computing.[6] Plesser et al.
(2007) Efficient Parallel Simulation of Large-Scale Neuronal
Networks on Clusters of Multiprocessor Computers.[7] Rotter
$\&$ Diesmann (1999) Exact digital simulation of
time-invariant linear systems with applications to neuronal
modeling.[8] Morrison et al. (2007) Exact subthreshold
integration with continuous spike times in discrete time
neural network simulations.[9] Hanuschkin et al. (2010) A
general and efficient method for incorporating exact spike
times in globally time-driven simulations.[10] Morrison et
al. (2007) Spike-time dependent plasticity in balanced
recurrent networks.[11] Potjans et al. (2010) Enabling
functional neural circuit simulations with distributed
computing of neuromodulated plasticity.[12] Plesser $\&$
Enger (2013) NEST Topology User Manual.[13] Kunkel (2011)
Meeting the memory challenges of brain-scale network
simulation Front.[14] Helias et al. (2012 Supercomputers
ready for use as discovery machines for neuroscience.[15]
Eppler et al. (2009) A testsuite for a neural simulation
engine.[16] Zaytsev (2013) Increasing quality and managing
complexity in neuroinformatics software development with
continuous integration.[17] Eppler et al. (2008) PyNEST: A
Convenient Interface to the NEST Simulator.[18] Davison et
al. (2008) PyNN: a common interface for neuronal network
simulators.[19] Djurfeldt et al. (2010) Run-time
interoperability between neuronal network simulators based
on the MUSIC framework.},
month = {Jul},
date = {2013-07-02},
organization = {INM Retreat 2013, Jülich (Germany), 2
Jul 2013 - 3 Jul 2013},
subtyp = {Other},
cin = {INM-6 / JSC / IAS-6},
cid = {I:(DE-Juel1)INM-6-20090406 / I:(DE-Juel1)JSC-20090406 /
I:(DE-Juel1)IAS-6-20130828},
pnm = {331 - Signalling Pathways and Mechanisms in the Nervous
System (POF2-331) / 89574 - Theory, modelling and simulation
(POF2-89574) / BRAINSCALES - Brain-inspired multiscale
computation in neuromorphic hybrid systems (269921) /
W2Morrison - W2/W3 Professorinnen Programm der
Helmholtzgemeinschaft (B1175.01.12) / SLNS - SimLab
Neuroscience (Helmholtz-SLNS)},
pid = {G:(DE-HGF)POF2-331 / G:(DE-HGF)POF2-89574 /
G:(EU-Grant)269921 / G:(DE-HGF)B1175.01.12 /
G:(DE-Juel1)Helmholtz-SLNS},
typ = {PUB:(DE-HGF)24},
url = {https://juser.fz-juelich.de/record/155353},
}