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@ARTICLE{Jechalke:187140,
      author       = {Jechalke, Sven and Focks, Andreas and Rosendahl, Ingrid and
                      Groeneweg, Joost and Siemens, Jan and Heuer, Holger and
                      Smalla, Kornelia},
      title        = {{S}tructural and functional response of the soil bacterial
                      community to application of manure from difloxacin-treated
                      pigs},
      journal      = {FEMS microbiology ecology},
      volume       = {87},
      number       = {1},
      issn         = {0168-6496},
      address      = {Oxford [u.a.]},
      publisher    = {Wiley-Blackwell},
      reportid     = {FZJ-2015-00814},
      pages        = {78 - 88},
      year         = {2014},
      abstract     = {Difloxacin (DIF) belongs to the class of fluoroquinolone
                      antibiotics that have been intensively used for the
                      treatment of bacterial infections in veterinary and human
                      medicine. The aim of this field study was to compare the
                      effect of manure from DIF-treated pigs and untreated pigs on
                      the bacterial community structure and resistance gene
                      abundance in bulk soil and rhizosphere of maize. A
                      significant effect of DIF manure on the bacterial community
                      composition in bulk soil was revealed by denaturing gradient
                      gel electrophoresis (DGGE) of bacterial 16S rRNA gene
                      fragments amplified from total community DNA. In few
                      samples, quinolone resistance genes qnrB and qnrS1/qnrS2
                      were detected by PCR and subsequent hybridization, while
                      qnrA was not detected. Quantitative PCR revealed an
                      increased abundance of the integrase gene intI1 of class I
                      integrons and sulfonamide resistance genes sul1 and sul2 in
                      DIF manure-treated bulk soil and rhizosphere, relative to
                      16S rRNA genes, while traN genes specific for LowGC-type
                      plasmids were increased only in bulk soil. Principal
                      component analysis of DGGE profiles suggested a manure
                      effect in soil until day 28, but samples of days 71 and 140
                      were found close to untreated soil, indicating resilience of
                      soil community compositions from disturbances by
                      manure.Keywords},
      cin          = {IBG-3},
      ddc          = {570},
      cid          = {I:(DE-Juel1)IBG-3-20101118},
      pnm          = {246 - Modelling and Monitoring Terrestrial Systems: Methods
                      and Technologies (POF2-246) / 255 - Terrestrial Systems:
                      From Observation to Prediction (POF3-255)},
      pid          = {G:(DE-HGF)POF2-246 / G:(DE-HGF)POF3-255},
      typ          = {PUB:(DE-HGF)16},
      UT           = {WOS:000329170100008},
      pubmed       = {pmid:23962048},
      doi          = {10.1111/1574-6941.12191},
      url          = {https://juser.fz-juelich.de/record/187140},
}