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@ARTICLE{Grunzke:202337,
author = {Grunzke, Richard and Breuers, Sebastian and Gesing, Sandra
and Herres-Pawlis, Sonja and Kruse, Martin and Blunk, Dirk
and de la Garza, Luis and Packschies, Lars and Schäfer,
Patrick and Schärfe, Charlotta and Schlemmer, Tobias and
Steinke, Thomas and Schuller, Bernd and Müller-Pfefferkorn,
Ralph and Jäkel, René and Nagel, Wolfgang E. and Atkinson,
Malcolm and Krüger, Jens},
title = {{S}tandards-based metadata management for molecular
simulations},
journal = {Concurrency and computation},
volume = {26},
number = {10},
issn = {1532-0626},
address = {Chichester},
publisher = {Wiley},
reportid = {FZJ-2015-04601},
pages = {1744 - 1759},
year = {2014},
abstract = {State-of-the-art research in a variety of natural sciences
depends heavily on methods of computational chemistry, for
example, the calculation of the properties of materials,
proteins, catalysts, and drugs. Applications providing such
methods require a lot of expertise to handle their
complexity and the usage of high-performance computing. The
MoSGrid (molecular simulation grid) infrastructure relieves
this burden from scientists by providing a science gateway,
which eases access to and usage of computational chemistry
applications. One of its cornerstones is the molecular
simulations markup language (MSML), an extension of the
chemical markup language. MSML abstracts all chemical as
well as computational aspects of simulations. An application
and its results can be described with common semantics.
Using such application, independent descriptions users can
easily switch between different applications or compare
them. This paper introduces MSML, its integration into a
science gateway, and its usage for molecular dynamics,
quantum chemistry, and protein docking.},
cin = {JSC},
ddc = {004},
cid = {I:(DE-Juel1)JSC-20090406},
pnm = {412 - Grid Technologies and Infrastructures (POF2-412)},
pid = {G:(DE-HGF)POF2-412},
typ = {PUB:(DE-HGF)16},
UT = {WOS:000337629900005},
doi = {10.1002/cpe.3116},
url = {https://juser.fz-juelich.de/record/202337},
}