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@ARTICLE{Lobet:203177,
      author       = {Lobet, Guillaume and Pound, Michael P. and Diener, Julien
                      and Pradal, Christophe and Draye, Xavier and Godin,
                      Christophe and Javaux, Mathieu and Leitner, Daniel and
                      Meunier, Félicien and Nacry, Philippe and Pridmore, Tony P.
                      and Schnepf, Andrea},
      title        = {{R}oot {S}ystem {M}arkup {L}anguage: {T}oward a {U}nified
                      {R}oot {A}rchitecture {D}escription {L}anguage},
      journal      = {Plant physiology},
      volume       = {167},
      number       = {3},
      issn         = {1532-2548},
      address      = {Rockville, Md.},
      publisher    = {Soc.},
      reportid     = {FZJ-2015-05182},
      pages        = {617 - 627},
      year         = {2015},
      abstract     = {The number of image analysis tools supporting the
                      extraction of architectural features of root systems has
                      increased in recent years. These tools offer a handy set of
                      complementary facilities, yet it is widely accepted that
                      none of these software tools is able to extract in an
                      efficient way the growing array of static and dynamic
                      features for different types of images and species. We
                      describe the Root System Markup Language (RSML), which has
                      been designed to overcome two major challenges: (1) to
                      enable portability of root architecture data between
                      different software tools in an easy and interoperable
                      manner, allowing seamless collaborative work; and (2) to
                      provide a standard format upon which to base central
                      repositories that will soon arise following the expanding
                      worldwide root phenotyping effort. RSML follows the XML
                      standard to store two- or three-dimensional image metadata,
                      plant and root properties and geometries, continuous
                      functions along individual root paths, and a suite of
                      annotations at the image, plant, or root scale at one or
                      several time points. Plant ontologies are used to describe
                      botanical entities that are relevant at the scale of root
                      system architecture. An XML schema describes the features
                      and constraints of RSML, and open-source packages have been
                      developed in several languages (R, Excel, Java, Python, and
                      C#) to enable researchers to integrate RSML files into
                      popular research workflow.},
      cin          = {IBG-3},
      ddc          = {580},
      cid          = {I:(DE-Juel1)IBG-3-20101118},
      pnm          = {255 - Terrestrial Systems: From Observation to Prediction
                      (POF3-255)},
      pid          = {G:(DE-HGF)POF3-255},
      typ          = {PUB:(DE-HGF)16},
      UT           = {WOS:000354413900002},
      pubmed       = {pmid:25614065},
      doi          = {10.1104/pp.114.253625},
      url          = {https://juser.fz-juelich.de/record/203177},
}