Conference Presentation (Invited) FZJ-2015-05951

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Statistical mechanical models for cation selectivity in biological channels

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2015

CECAM Workshop: Computational approaches to chemical senses, JülichJülich, Germany, 9 Sep 2015 - 11 Sep 20152015-09-092015-09-11

Abstract: Cation selective channels constitute the gate for ion currents through the cell membrane. These proteins select between the physiologically important Na+, K+ and Ca2+ cations. Here we present a statistical mechanical model based on atomistic structural information and without tuned parameters that reproduces the selectivity of bacterial Na+ and Ca2+ selective ion channels, the only such channels for which we have X-ray structures. The importance of the inclusion of step-wise cation hydration in these results confirms the essential role partial dehydration plays in the bacterial Na+ channels. The model, proven reliable against experimental data, could be straightforwardly used for designing Na+ and Ca2+ selective nanopores.


Contributing Institute(s):
  1. Jülich Supercomputing Center (JSC)
  2. JARA - HPC (JARA-HPC)
  3. Computational Biomedicine (IAS-5)
  4. Computational Biomedicine (INM-9)
Research Program(s):
  1. 511 - Computational Science and Mathematical Methods (POF3-511) (POF3-511)
  2. 574 - Theory, modelling and simulation (POF3-574) (POF3-574)
  3. SMHB - Supercomputing and Modelling for the Human Brain (HGF-SMHB-2013-2017) (HGF-SMHB-2013-2017)

Appears in the scientific report 2015
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The record appears in these collections:
Document types > Presentations > Conference Presentations
JARA > JARA > JARA-JARA\-HPC
Institute Collections > IAS > IAS-5
Institute Collections > INM > INM-9
Workflow collections > Public records
Institute Collections > JSC
Publications database

 Record created 2015-09-29, last modified 2021-01-29



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