Home > Publications database > Coupling an Ensemble of Homologues Improves Refinement of Protein Homology Models > print |
001 | 279299 | ||
005 | 20210129221030.0 | ||
024 | 7 | _ | |a 10.1021/acs.jctc.5b00942 |2 doi |
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100 | 1 | _ | |a Wildberg, André |0 P:(DE-Juel1)131565 |b 0 |
245 | _ | _ | |a Coupling an Ensemble of Homologues Improves Refinement of Protein Homology Models |
260 | _ | _ | |a Washington, DC |c 2015 |b American Chemical Society (ACS) |
336 | 7 | _ | |a article |2 DRIVER |
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336 | 7 | _ | |a Journal Article |b journal |m journal |0 PUB:(DE-HGF)16 |s 1520523377_23723 |2 PUB:(DE-HGF) |
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336 | 7 | _ | |a Journal Article |0 0 |2 EndNote |
520 | _ | _ | |a Atomic models of proteins built by homology modeling or from low-resolution experimental data may contain considerable local errors. The refinement success of molecular dynamics simulations is usually limited by both force field accuracy and by the substantial width of the conformational distribution at physiological temperatures. We propose a method to overcome both these problems by coupling homologous replicas during a molecular dynamics simulation, which narrows the conformational distribution, and smoothens and even improves the energy landscape by adding evolutionary information. |
536 | _ | _ | |a 551 - Functional Macromolecules and Complexes (POF3-551) |0 G:(DE-HGF)POF3-551 |c POF3-551 |f POF III |x 0 |
536 | _ | _ | |a Critical Assessment of Protein Structure Prediction 12 (jics66_20160501) |0 G:(DE-Juel1)jics66_20160501 |c jics66_20160501 |f Critical Assessment of Protein Structure Prediction 12 |x 1 |
588 | _ | _ | |a Dataset connected to CrossRef |
700 | 1 | _ | |a Della Corte, Dennis |0 P:(DE-Juel1)145868 |b 1 |u fzj |
700 | 1 | _ | |a Schröder, Gunnar |0 P:(DE-Juel1)132018 |b 2 |e Corresponding author |u fzj |
773 | _ | _ | |a 10.1021/acs.jctc.5b00942 |g Vol. 11, no. 12, p. 5578 - 5582 |0 PERI:(DE-600)2166976-4 |n 12 |p 5578 - 5582 |t Journal of chemical theory and computation |v 11 |y 2015 |x 1549-9626 |
856 | 4 | _ | |u http://pubs.acs.org/doi/10.1021/acs.jctc.5b00942 |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/279299/files/Coupling%20an%20Ensemble%20of%20Homologues%20Improves%20Refinement%20of%20Protein%20Homology%20Models.pdf |y Restricted |
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913 | 1 | _ | |a DE-HGF |b Key Technologies |l BioSoft – Fundamentals for future Technologies in the fields of Soft Matter and Life Sciences |1 G:(DE-HGF)POF3-550 |0 G:(DE-HGF)POF3-551 |2 G:(DE-HGF)POF3-500 |v Functional Macromolecules and Complexes |x 0 |4 G:(DE-HGF)POF |3 G:(DE-HGF)POF3 |
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