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@ARTICLE{Kondrat:281761,
author = {Kondrat, Svyatoslav and Zimmermann, Olav and Wiechert,
Wolfgang and von Lieres, Eric},
title = {{D}iscrete-continuous reaction-diffusion model with mobile
point-like sources and sinks},
journal = {The European physical journal / E},
volume = {39},
number = {1},
issn = {1292-8941},
address = {Berlin},
publisher = {Springer},
reportid = {FZJ-2016-01443},
pages = {11},
year = {2016},
abstract = {In many applications in soft and biological physics, there
are multiple time and length scales involved but often with
a distinct separation between them. For instance, in enzyme
kinetics, enzymes are relatively large, move slowly and
their copy numbers are typically small, while the
metabolites (being transformed by these enzymes) are often
present in abundance, are small in size and diffuse fast. It
seems thus natural to apply different techniques to
different time and length levels and couple them. Here we
explore this possibility by constructing a
stochastic-deterministic discrete-continuous
reaction-diffusion model with mobile sources and sinks. Such
an approach allows in particular to separate different
sources of stochasticity. We demonstrate its application by
modelling enzyme-catalysed reactions with freely diffusing
enzymes and a heterogeneous source of metabolites. Our
calculations suggest that using a higher amount of less
active enzymes, as compared to fewer more active enzymes,
reduces the metabolite pool size and correspondingly the lag
time, giving rise to a faster response to external stimuli.
The methodology presented can be extended to more complex
systems and offers exciting possibilities for studying
problems where spatial heterogeneities, stochasticity or
discreteness play a role.},
cin = {IBG-1 / JSC},
ddc = {530},
cid = {I:(DE-Juel1)IBG-1-20101118 / I:(DE-Juel1)JSC-20090406},
pnm = {511 - Computational Science and Mathematical Methods
(POF3-511) / 583 - Innovative Synergisms (POF3-583)},
pid = {G:(DE-HGF)POF3-511 / G:(DE-HGF)POF3-583},
typ = {PUB:(DE-HGF)16},
UT = {WOS:000369330800004},
doi = {10.1140/epje/i2016-16011-0},
url = {https://juser.fz-juelich.de/record/281761},
}