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000033766 0247_ $$2DOI$$a10.1103/PhysRevE.68.061903
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000033766 084__ $$2WoS$$aPhysics, Fluids & Plasmas
000033766 084__ $$2WoS$$aPhysics, Mathematical
000033766 1001_ $$0P:(DE-Juel1)VDB10343$$aAllahyarov, E.$$b0$$uFZJ
000033766 245__ $$aAdsorption of monovalent and multivalent cations and anions on DNA molecules
000033766 260__ $$aCollege Park, Md.$$bAPS$$c2003
000033766 264_1 $$2Crossref$$3online$$bAmerican Physical Society (APS)$$c2003-12-15
000033766 264_1 $$2Crossref$$3print$$bAmerican Physical Society (APS)$$c2003-12-01
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000033766 440_0 $$04924$$aPhysical Review E$$v68$$x1539-3755
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000033766 520__ $$aAdsorption of monovalent and multivalent cations and anions on a deoxyribose nucleic acid (DNA) molecule from a salt solution is investigated by computer simulation. The ions are modeled as charged hard spheres, the DNA molecule as a point charge pattern following the double-helical phosphate strands. The geometrical shape of the DNA molecules is modeled on different levels ranging from a simple cylindrical shape to structured models which include the major and minor grooves between the phosphate strands. The densities of the ions adsorbed on the phosphate strands in the major and in the minor grooves are calculated. First, we find that the adsorption pattern on the DNA surface depends strongly on its geometrical shape: counterions adsorb preferentially along the phosphate strands for a cylindrical model shape, but in the minor groove for a geometrically structured model. Second, we find that an addition of monovalent salt ions results in an increase of the charge density in the minor groove while the total charge density of ions adsorbed in the major groove stays unchanged. The adsorbed ion densities are highly structured along the minor groove while they are almost smeared along the major groove. Furthermore, for a fixed amount of added salt, the major-groove cationic charge is independent of the counterion valency. For increasing salt concentration the major groove is neutralized while the total charge adsorbed in the minor groove is constant. DNA overcharging is detected for multivalent salts. Simulations for larger ion radii, which mimic the effect of ion hydration, indicate an increased adsorbtion of cations in the major groove.
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000033766 7001_ $$0P:(DE-HGF)0$$aLöwen, H.$$b1
000033766 7001_ $$0P:(DE-Juel1)130665$$aGompper, G.$$b2$$uFZJ
000033766 77318 $$2Crossref$$3journal-article$$a10.1103/physreve.68.061903$$bAmerican Physical Society (APS)$$d2003-12-15$$n6$$p061903$$tPhysical Review E$$v68$$x1063-651X$$y2003
000033766 773__ $$0PERI:(DE-600)2844562-4$$a10.1103/PhysRevE.68.061903$$gVol. 68, p. 061903$$n6$$p061903$$q68<061903$$tPhysical review / E$$v68$$x1063-651X$$y2003
000033766 8567_ $$uhttp://hdl.handle.net/2128/1493$$uhttp://dx.doi.org/10.1103/PhysRevE.68.061903
000033766 8564_ $$uhttps://juser.fz-juelich.de/record/33766/files/38458.pdf$$yOpenAccess
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