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000057085 0247_ $$2DOI$$a10.1186/1471-2105-7-490
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000057085 041__ $$aeng
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000057085 084__ $$2WoS$$aBiochemical Research Methods
000057085 084__ $$2WoS$$aBiotechnology & Applied Microbiology
000057085 084__ $$2WoS$$aMathematical & Computational Biology
000057085 1001_ $$0P:(DE-HGF)0$$aSeibel, P. N.$$b0
000057085 245__ $$aXML schemas for common bioinformatic data types and their application in workflow systems
000057085 260__ $$aLondon$$bBioMed Central$$c2006
000057085 300__ $$a490
000057085 3367_ $$0PUB:(DE-HGF)16$$2PUB:(DE-HGF)$$aJournal Article
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000057085 440_0 $$014043$$aBMC Bioinformatics$$v7$$x1471-2105
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000057085 520__ $$aToday, there is a growing need in bioinformatics to combine available software tools into chains, thus building complex applications from existing single-task tools. To create such workflows, the tools involved have to be able to work with each other's data--therefore, a common set of well-defined data formats is needed. Unfortunately, current bioinformatic tools use a great variety of heterogeneous formats.Acknowledging the need for common formats, the Helmholtz Open BioInformatics Technology network (HOBIT) identified several basic data types used in bioinformatics and developed appropriate format descriptions, formally defined by XML schemas, and incorporated them in a Java library (BioDOM). These schemas currently cover sequence, sequence alignment, RNA secondary structure and RNA secondary structure alignment formats in a form that is independent of any specific program, thus enabling seamless interoperation of different tools. All XML formats are available at http://bioschemas.sourceforge.net, the BioDOM library can be obtained at http://biodom.sourceforge.net.The HOBIT XML schemas and the BioDOM library simplify adding XML support to newly created and existing bioinformatic tools, enabling these tools to interoperate seamlessly in workflow scenarios.
000057085 536__ $$0G:(DE-Juel1)FUEK411$$2G:(DE-HGF)$$aScientific Computing$$cP41$$x0
000057085 588__ $$aDataset connected to Web of Science, Pubmed
000057085 650_2 $$2MeSH$$aAlgorithms
000057085 650_2 $$2MeSH$$aComputational Biology: methods
000057085 650_2 $$2MeSH$$aComputer Graphics
000057085 650_2 $$2MeSH$$aDatabase Management Systems
000057085 650_2 $$2MeSH$$aInformation Storage and Retrieval
000057085 650_2 $$2MeSH$$aProgramming Languages
000057085 650_2 $$2MeSH$$aSequence Alignment
000057085 650_2 $$2MeSH$$aSoftware
000057085 650_2 $$2MeSH$$aSystems Integration
000057085 650_2 $$2MeSH$$aUser-Computer Interface
000057085 650_7 $$2WoSType$$aJ
000057085 7001_ $$0P:(DE-HGF)0$$aKrüger, J.$$b1
000057085 7001_ $$0P:(DE-HGF)0$$aHartmeier, S.$$b2
000057085 7001_ $$0P:(DE-HGF)0$$aSchwarzer, K.$$b3
000057085 7001_ $$0P:(DE-HGF)0$$aLöwenthal, K.$$b4
000057085 7001_ $$0P:(DE-Juel1)VDB61223$$aMersch, H.$$b5$$uFZJ
000057085 7001_ $$0P:(DE-HGF)0$$aDandekar, Th.$$b6
000057085 7001_ $$0P:(DE-HGF)0$$aGiegerich, R.$$b7
000057085 773__ $$0PERI:(DE-600)2041484-5$$a10.1186/1471-2105-7-490$$gVol. 7, p. 490$$p490$$q7<490$$tBMC bioinformatics$$v7$$x1471-2105$$y2006
000057085 8567_ $$2Pubmed Central$$uhttp://www.ncbi.nlm.nih.gov/pmc/articles/PMC2001303
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000057085 9141_ $$aNachtrag$$y2006
000057085 915__ $$0StatID:(DE-HGF)0010$$aJCR/ISI refereed
000057085 9201_ $$0I:(DE-Juel1)VDB62$$d31.12.2007$$gZAM$$kZAM$$lZentralinstitut für Angewandte Mathematik$$x1
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