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000057335 084__ $$2WoS$$aPhysics, Fluids & Plasmas
000057335 084__ $$2WoS$$aPhysics, Mathematical
000057335 1001_ $$0P:(DE-Juel1)VDB37724$$aYang, Y.$$b0$$uFZJ
000057335 245__ $$aFree energy and extension of a semiflexible polymer in cylindrical confining geometries
000057335 260__ $$aCollege Park, Md.$$bAPS$$c2007
000057335 264_1 $$2Crossref$$3online$$bAmerican Physical Society (APS)$$c2007-07-19
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000057335 440_0 $$04924$$aPhysical Review E$$v76$$x1539-3755
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000057335 520__ $$aWe consider a long, semiflexible polymer with persistence length P and contour length L fluctuating in a narrow cylindrical channel of diameter D. In the regime D < P < L the free energy of confinement Delta F and the length of the channel R-parallel to occupied by the polymer are given by Odijk's relations Delta F/R-parallel to=A(o)k(B)TP(-1/3)D(-2/3) and R-parallel to=L[1-alpha(o)(D/P)(2/3)], where A(o) and alpha(o) are dimensionless amplitudes. Using a simulation algorithm inspired by the pruned enriched Rosenbluth method, which yields results for very long polymers, we determine A(o) and alpha(o) and the analogous amplitudes for a channel with a rectangular cross section. For a semiflexible polymer confined to the surface of a cylinder, the corresponding amplitudes are derived with an exact analytic approach. The results are relevant for interpreting experiments on biopolymers in microchannels or microfluidic devices.
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000057335 7001_ $$0P:(DE-Juel1)VDB2205$$aBurkhardt, T. W.$$b1$$uFZJ
000057335 7001_ $$0P:(DE-Juel1)130665$$aGompper, G.$$b2$$uFZJ
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000057335 8567_ $$uhttp://dx.doi.org/10.1103/PhysRevE.76.011804
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000057335 9201_ $$0I:(DE-Juel1)VDB782$$d31.12.2010$$gIFF$$kIFF-2$$lTheorie der Weichen Materie und Biophysik$$x0
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000057335 999C5 $$1P. Grassberger$$2Crossref$$oP. Grassberger Monte Carlo Approach to Biopolymers and Protein Folding 1998$$tMonte Carlo Approach to Biopolymers and Protein Folding$$y1998
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