Home > Publications database > Efficient parallelization of analytic bond-order potentials for large-scale atomistic simulations > print |
001 | 819845 | ||
005 | 20210129224400.0 | ||
024 | 7 | _ | |a 10.1016/j.cpc.2016.03.008 |2 doi |
024 | 7 | _ | |a 0010-4655 |2 ISSN |
024 | 7 | _ | |a 1386-9485 |2 ISSN |
024 | 7 | _ | |a 1879-2944 |2 ISSN |
024 | 7 | _ | |a WOS:000377231300008 |2 WOS |
037 | _ | _ | |a FZJ-2016-05429 |
082 | _ | _ | |a 004 |
100 | 1 | _ | |a Teijeiro, C. |0 P:(DE-HGF)0 |b 0 |e Corresponding author |
245 | _ | _ | |a Efficient parallelization of analytic bond-order potentials for large-scale atomistic simulations |
260 | _ | _ | |a Amsterdam |c 2016 |b North Holland Publ. Co. |
336 | 7 | _ | |a article |2 DRIVER |
336 | 7 | _ | |a Output Types/Journal article |2 DataCite |
336 | 7 | _ | |a Journal Article |b journal |m journal |0 PUB:(DE-HGF)16 |s 1476881578_7921 |2 PUB:(DE-HGF) |
336 | 7 | _ | |a ARTICLE |2 BibTeX |
336 | 7 | _ | |a JOURNAL_ARTICLE |2 ORCID |
336 | 7 | _ | |a Journal Article |0 0 |2 EndNote |
520 | _ | _ | |a Analytic bond-order potentials (BOPs) provide a way to compute atomistic properties with controllable accuracy. For large-scale computations of heterogeneous compounds at the atomistic level, both the computational efficiency and memory demand of BOP implementations have to be optimized. Since the evaluation of BOPs is a local operation within a finite environment, the parallelization concepts known from short-range interacting particle simulations can be applied to improve the performance of these simulations. In this work, several efficient parallelization methods for BOPs that use three-dimensional domain decomposition schemes are described. The schemes are implemented into the bond-order potential code BOPfox, and their performance is measured in a series of benchmarks. Systems of up to several millions of atoms are simulated on a high performance computing system, and parallel scaling is demonstrated for up to thousands of processors. |
536 | _ | _ | |a 511 - Computational Science and Mathematical Methods (POF3-511) |0 G:(DE-HGF)POF3-511 |c POF3-511 |f POF III |x 0 |
588 | _ | _ | |a Dataset connected to CrossRef |
700 | 1 | _ | |a Hammerschmidt, T. |0 P:(DE-HGF)0 |b 1 |e Corresponding author |
700 | 1 | _ | |a Drautz, R. |0 P:(DE-HGF)0 |b 2 |e Corresponding author |
700 | 1 | _ | |a Sutmann, G. |0 P:(DE-Juel1)132274 |b 3 |e Corresponding author |u fzj |
773 | _ | _ | |a 10.1016/j.cpc.2016.03.008 |g Vol. 204, p. 64 - 73 |0 PERI:(DE-600)1466511-6 |p 64 - 73 |t Computer physics communications |v 204 |y 2016 |x 0010-4655 |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/819845/files/1-s2.0-S0010465516300662-main.pdf |y Restricted |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/819845/files/1-s2.0-S0010465516300662-main.gif?subformat=icon |x icon |y Restricted |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/819845/files/1-s2.0-S0010465516300662-main.jpg?subformat=icon-1440 |x icon-1440 |y Restricted |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/819845/files/1-s2.0-S0010465516300662-main.jpg?subformat=icon-180 |x icon-180 |y Restricted |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/819845/files/1-s2.0-S0010465516300662-main.jpg?subformat=icon-640 |x icon-640 |y Restricted |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/819845/files/1-s2.0-S0010465516300662-main.pdf?subformat=pdfa |x pdfa |y Restricted |
909 | C | O | |o oai:juser.fz-juelich.de:819845 |p VDB |
910 | 1 | _ | |a Forschungszentrum Jülich |0 I:(DE-588b)5008462-8 |k FZJ |b 3 |6 P:(DE-Juel1)132274 |
913 | 1 | _ | |a DE-HGF |b Key Technologies |1 G:(DE-HGF)POF3-510 |0 G:(DE-HGF)POF3-511 |2 G:(DE-HGF)POF3-500 |v Computational Science and Mathematical Methods |x 0 |4 G:(DE-HGF)POF |3 G:(DE-HGF)POF3 |l Supercomputing & Big Data |
914 | 1 | _ | |y 2016 |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0200 |2 StatID |b SCOPUS |
915 | _ | _ | |a No Authors Fulltext |0 StatID:(DE-HGF)0550 |2 StatID |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0600 |2 StatID |b Ebsco Academic Search |
915 | _ | _ | |a JCR |0 StatID:(DE-HGF)0100 |2 StatID |b COMPUT PHYS COMMUN : 2015 |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0150 |2 StatID |b Web of Science Core Collection |
915 | _ | _ | |a WoS |0 StatID:(DE-HGF)0110 |2 StatID |b Science Citation Index |
915 | _ | _ | |a WoS |0 StatID:(DE-HGF)0111 |2 StatID |b Science Citation Index Expanded |
915 | _ | _ | |a IF < 5 |0 StatID:(DE-HGF)9900 |2 StatID |
915 | _ | _ | |a Peer Review |0 StatID:(DE-HGF)0030 |2 StatID |b ASC |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)1150 |2 StatID |b Current Contents - Physical, Chemical and Earth Sciences |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0310 |2 StatID |b NCBI Molecular Biology Database |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0300 |2 StatID |b Medline |
915 | _ | _ | |a Nationallizenz |0 StatID:(DE-HGF)0420 |2 StatID |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0199 |2 StatID |b Thomson Reuters Master Journal List |
920 | 1 | _ | |0 I:(DE-Juel1)JSC-20090406 |k JSC |l Jülich Supercomputing Center |x 0 |
980 | _ | _ | |a journal |
980 | _ | _ | |a VDB |
980 | _ | _ | |a UNRESTRICTED |
980 | _ | _ | |a I:(DE-Juel1)JSC-20090406 |
Library | Collection | CLSMajor | CLSMinor | Language | Author |
---|