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000820689 1001_ $$0P:(DE-HGF)0$$aĆwiek-Kupczyńska, Hanna$$b0
000820689 245__ $$aMeasures for interoperability of phenotypic data: minimum information requirements and formatting
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000820689 520__ $$aBackgroundPlant phenotypic data shrouds a wealth of information which, when accurately analysed and linked to other data types, brings to light the knowledge about the mechanisms of life. As phenotyping is a field of research comprising manifold, diverse and time-consuming experiments, the findings can be fostered by reusing and combining existing datasets. Their correct interpretation, and thus replicability, comparability and interoperability, is possible provided that the collected observations are equipped with an adequate set of metadata. So far there have been no common standards governing phenotypic data description, which hampered data exchange and reuse.ResultsIn this paper we propose the guidelines for proper handling of the information about plant phenotyping experiments, in terms of both the recommended content of the description and its formatting. We provide a document called “Minimum Information About a Plant Phenotyping Experiment”, which specifies what information about each experiment should be given, and a Phenotyping Configuration for the ISA-Tab format, which allows to practically organise this information within a dataset. We provide examples of ISA-Tab-formatted phenotypic data, and a general description of a few systems where the recommendations have been implemented.ConclusionsAcceptance of the rules described in this paper by the plant phenotyping community will help to achieve findable, accessible, interoperable and reusable data.
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000820689 536__ $$0G:(EU-Grant)284443$$aEPPN - European Plant Phenotyping Network (284443)$$c284443$$fFP7-INFRASTRUCTURES-2011-1$$x2
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000820689 7001_ $$0P:(DE-HGF)0$$aAltmann, Thomas$$b1
000820689 7001_ $$0P:(DE-HGF)0$$aArend, Daniel$$b2
000820689 7001_ $$0P:(DE-HGF)0$$aArnaud, Elizabeth$$b3
000820689 7001_ $$0P:(DE-HGF)0$$aChen, Dijun$$b4
000820689 7001_ $$0P:(DE-HGF)0$$aCornut, Guillaume$$b5
000820689 7001_ $$0P:(DE-Juel1)143649$$aFiorani, Fabio$$b6
000820689 7001_ $$0P:(DE-HGF)0$$aFrohmberg, Wojciech$$b7
000820689 7001_ $$0P:(DE-HGF)0$$aJunker, Astrid$$b8
000820689 7001_ $$0P:(DE-HGF)0$$aKlukas, Christian$$b9
000820689 7001_ $$0P:(DE-HGF)0$$aLange, Matthias$$b10
000820689 7001_ $$0P:(DE-HGF)0$$aMazurek, Cezary$$b11
000820689 7001_ $$0P:(DE-Juel1)167116$$aNafissi, Anahita$$b12
000820689 7001_ $$0P:(DE-HGF)0$$aNeveu, Pascal$$b13
000820689 7001_ $$0P:(DE-HGF)0$$avan Oeveren, Jan$$b14
000820689 7001_ $$0P:(DE-HGF)0$$aPommier, Cyril$$b15
000820689 7001_ $$0P:(DE-Juel1)129384$$aPoorter, Hendrik$$b16
000820689 7001_ $$0P:(DE-HGF)0$$aRocca-Serra, Philippe$$b17
000820689 7001_ $$0P:(DE-HGF)0$$aSansone, Susanna-Assunta$$b18
000820689 7001_ $$0P:(DE-HGF)0$$aScholz, Uwe$$b19
000820689 7001_ $$0P:(DE-HGF)0$$avan Schriek, Marco$$b20
000820689 7001_ $$0P:(DE-HGF)0$$aSeren, Ümit$$b21
000820689 7001_ $$0P:(DE-Juel1)145719$$aUsadel, Björn$$b22
000820689 7001_ $$0P:(DE-HGF)0$$aWeise, Stephan$$b23
000820689 7001_ $$0P:(DE-HGF)0$$aKersey, Paul$$b24
000820689 7001_ $$0P:(DE-HGF)0$$aKrajewski, Paweł$$b25$$eCorresponding author
000820689 773__ $$0PERI:(DE-600)2203723-8$$a10.1186/s13007-016-0144-4$$gVol. 12, no. 1, p. 44$$n1$$p44$$tPlant methods$$v12$$x1746-4811$$y2016
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