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@INBOOK{Amunts:826140,
author = {Denker, Michael and Grün, Sonja},
editor = {Amunts, Katrin and Grandinetti, Lucio and Lippert, Thomas
and Petkov, Nicolai},
title = {{D}esigning {W}orkflows for the {R}eproducible {A}nalysis
of {E}lectrophysiological {D}ata},
volume = {10087},
address = {Cham},
publisher = {Springer International Publishing},
reportid = {FZJ-2017-00395},
isbn = {978-3-319-50861-0 (print)},
series = {Lecture Notes in Computer Science},
pages = {58 - 72},
year = {2016},
comment = {Brain-Inspired Computing / Amunts, Katrin (Editor) ; Cham :
Springer International Publishing, 2016, Chapter 5 ; ISSN:
0302-9743=1611-3349 ; ISBN:
978-3-319-50861-0=978-3-319-50862-7},
booktitle = {Brain-Inspired Computing / Amunts,
Katrin (Editor) ; Cham : Springer
International Publishing, 2016, Chapter
5 ; ISSN: 0302-9743=1611-3349 ; ISBN:
978-3-319-50861-0=978-3-319-50862-7},
abstract = {The workflows that cover the experimental recording of
neuronal data up to the publication of figures that
illustrate neuroscientific analysis results are interwoven
and complex. Unfortunately, current implementations of such
workflows of electrophysiological research are far from
being automatized, and software supporting such a goal is
largely in development or missing. In consequence, the level
of reproducibility of data analysis is poor compared to
other scientific disciplines. Although the problem is
well-known and leads to ineffective, unsustainable science,
there is no solution in sight in terms of a complete,
provenance-tracked workflow. Here, we outline principle
challenges that complicate the design of workflows for
electrophysiological research. We detail how existing tools
can be integrated to form partial workflows which address
some of the challenges. On the basis of a concrete workflow
implementation we discuss open questions and urgently needed
software components.},
organization = {BrainComp 2015,},
cin = {INM-6 / IAS-6 / INM-1 / JSC},
ddc = {004},
cid = {I:(DE-Juel1)INM-6-20090406 / I:(DE-Juel1)IAS-6-20130828 /
I:(DE-Juel1)INM-1-20090406 / I:(DE-Juel1)JSC-20090406},
pnm = {571 - Connectivity and Activity (POF3-571) / SMHB -
Supercomputing and Modelling for the Human Brain
(HGF-SMHB-2013-2017) / HBP - The Human Brain Project
(604102) / BRAINSCALES - Brain-inspired multiscale
computation in neuromorphic hybrid systems (269921) / DFG
project 238707842 - Kausative Mechanismen mesoskopischer
Aktivitätsmuster in der auditorischen
Kategorien-Diskrimination (238707842) / DFG project
237833830 - Optogenetische Analyse der für kognitive
Fähigkeiten zuständigen präfrontal-hippokampalen
Netzwerke in der Entwicklung (237833830)},
pid = {G:(DE-HGF)POF3-571 / G:(DE-Juel1)HGF-SMHB-2013-2017 /
G:(EU-Grant)604102 / G:(EU-Grant)269921 /
G:(GEPRIS)238707842 / G:(GEPRIS)237833830},
typ = {PUB:(DE-HGF)8 / PUB:(DE-HGF)7},
doi = {10.1007/978-3-319-50862-7_5},
url = {https://juser.fz-juelich.de/record/826140},
}