Home > Publications database > Designing Workflows for the Reproducible Analysis of Electrophysiological Data > print |
001 | 826140 | ||
005 | 20240313103120.0 | ||
020 | _ | _ | |a 978-3-319-50861-0 (print) |
020 | _ | _ | |a 978-3-319-50862-7 (electronic) |
024 | 7 | _ | |a 10.1007/978-3-319-50862-7_5 |2 doi |
024 | 7 | _ | |a 0302-9743 |2 ISSN |
024 | 7 | _ | |a 1611-3349 |2 ISSN |
037 | _ | _ | |a FZJ-2017-00395 |
041 | _ | _ | |a English |
082 | _ | _ | |a 004 |
100 | 1 | _ | |a Amunts, Katrin |0 P:(DE-Juel1)131631 |b 0 |e Editor |u fzj |
111 | 2 | _ | |a BrainComp 2015 |
245 | _ | _ | |a Designing Workflows for the Reproducible Analysis of Electrophysiological Data |
260 | _ | _ | |a Cham |c 2016 |b Springer International Publishing |
295 | 1 | 0 | |a Brain-Inspired Computing / Amunts, Katrin (Editor) ; Cham : Springer International Publishing, 2016, Chapter 5 ; ISSN: 0302-9743=1611-3349 ; ISBN: 978-3-319-50861-0=978-3-319-50862-7 |
300 | _ | _ | |a 58 - 72 |
336 | 7 | _ | |a Contribution to a conference proceedings |0 PUB:(DE-HGF)8 |2 PUB:(DE-HGF) |m contrib |
336 | 7 | _ | |a BOOK_CHAPTER |2 ORCID |
336 | 7 | _ | |a Book Section |0 7 |2 EndNote |
336 | 7 | _ | |a bookPart |2 DRIVER |
336 | 7 | _ | |a INBOOK |2 BibTeX |
336 | 7 | _ | |a Output Types/Book chapter |2 DataCite |
336 | 7 | _ | |a Contribution to a book |b contb |m contb |0 PUB:(DE-HGF)7 |s 1484407042_17616 |2 PUB:(DE-HGF) |
490 | 0 | _ | |a Lecture Notes in Computer Science |v 10087 |
520 | _ | _ | |a The workflows that cover the experimental recording of neuronal data up to the publication of figures that illustrate neuroscientific analysis results are interwoven and complex. Unfortunately, current implementations of such workflows of electrophysiological research are far from being automatized, and software supporting such a goal is largely in development or missing. In consequence, the level of reproducibility of data analysis is poor compared to other scientific disciplines. Although the problem is well-known and leads to ineffective, unsustainable science, there is no solution in sight in terms of a complete, provenance-tracked workflow. Here, we outline principle challenges that complicate the design of workflows for electrophysiological research. We detail how existing tools can be integrated to form partial workflows which address some of the challenges. On the basis of a concrete workflow implementation we discuss open questions and urgently needed software components. |
536 | _ | _ | |a 571 - Connectivity and Activity (POF3-571) |0 G:(DE-HGF)POF3-571 |c POF3-571 |x 0 |f POF III |
536 | _ | _ | |a SMHB - Supercomputing and Modelling for the Human Brain (HGF-SMHB-2013-2017) |0 G:(DE-Juel1)HGF-SMHB-2013-2017 |c HGF-SMHB-2013-2017 |x 1 |f SMHB |
536 | _ | _ | |a HBP - The Human Brain Project (604102) |0 G:(EU-Grant)604102 |c 604102 |x 2 |f FP7-ICT-2013-FET-F |
536 | _ | _ | |a BRAINSCALES - Brain-inspired multiscale computation in neuromorphic hybrid systems (269921) |0 G:(EU-Grant)269921 |c 269921 |x 3 |f FP7-ICT-2009-6 |
536 | _ | _ | |a DFG project 238707842 - Kausative Mechanismen mesoskopischer Aktivitätsmuster in der auditorischen Kategorien-Diskrimination (238707842) |0 G:(GEPRIS)238707842 |c 238707842 |x 4 |
536 | _ | _ | |a DFG project 237833830 - Optogenetische Analyse der für kognitive Fähigkeiten zuständigen präfrontal-hippokampalen Netzwerke in der Entwicklung (237833830) |0 G:(GEPRIS)237833830 |c 237833830 |x 5 |
588 | _ | _ | |a Dataset connected to CrossRef Book Series |
700 | 1 | _ | |a Grandinetti, Lucio |0 P:(DE-HGF)0 |b 1 |e Editor |
700 | 1 | _ | |a Lippert, Thomas |0 P:(DE-Juel1)132179 |b 2 |e Editor |u fzj |
700 | 1 | _ | |a Petkov, Nicolai |0 P:(DE-HGF)0 |b 3 |e Editor |
700 | 1 | _ | |a Denker, Michael |0 P:(DE-Juel1)144807 |b 4 |e Corresponding author |u fzj |
700 | 1 | _ | |a Grün, Sonja |0 P:(DE-Juel1)144168 |b 5 |u fzj |
773 | _ | _ | |a 10.1007/978-3-319-50862-7_5 |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/826140/files/chp_10.1007_978-3-319-50862-7_5.pdf |y Restricted |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/826140/files/chp_10.1007_978-3-319-50862-7_5.gif?subformat=icon |x icon |y Restricted |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/826140/files/chp_10.1007_978-3-319-50862-7_5.jpg?subformat=icon-1440 |x icon-1440 |y Restricted |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/826140/files/chp_10.1007_978-3-319-50862-7_5.jpg?subformat=icon-180 |x icon-180 |y Restricted |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/826140/files/chp_10.1007_978-3-319-50862-7_5.jpg?subformat=icon-640 |x icon-640 |y Restricted |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/826140/files/chp_10.1007_978-3-319-50862-7_5.pdf?subformat=pdfa |x pdfa |y Restricted |
909 | C | O | |o oai:juser.fz-juelich.de:826140 |p openaire |p VDB |p ec_fundedresources |
910 | 1 | _ | |a Forschungszentrum Jülich |0 I:(DE-588b)5008462-8 |k FZJ |b 0 |6 P:(DE-Juel1)131631 |
910 | 1 | _ | |a Forschungszentrum Jülich |0 I:(DE-588b)5008462-8 |k FZJ |b 2 |6 P:(DE-Juel1)132179 |
910 | 1 | _ | |a Forschungszentrum Jülich |0 I:(DE-588b)5008462-8 |k FZJ |b 4 |6 P:(DE-Juel1)144807 |
910 | 1 | _ | |a Forschungszentrum Jülich |0 I:(DE-588b)5008462-8 |k FZJ |b 5 |6 P:(DE-Juel1)144168 |
913 | 1 | _ | |a DE-HGF |b Key Technologies |l Decoding the Human Brain |1 G:(DE-HGF)POF3-570 |0 G:(DE-HGF)POF3-571 |2 G:(DE-HGF)POF3-500 |v Connectivity and Activity |x 0 |4 G:(DE-HGF)POF |3 G:(DE-HGF)POF3 |
914 | 1 | _ | |y 2016 |
915 | _ | _ | |a Nationallizenz |0 StatID:(DE-HGF)0420 |2 StatID |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0200 |2 StatID |b SCOPUS |
920 | 1 | _ | |0 I:(DE-Juel1)INM-6-20090406 |k INM-6 |l Computational and Systems Neuroscience |x 0 |
920 | 1 | _ | |0 I:(DE-Juel1)IAS-6-20130828 |k IAS-6 |l Theoretical Neuroscience |x 1 |
920 | 1 | _ | |0 I:(DE-Juel1)INM-1-20090406 |k INM-1 |l Strukturelle und funktionelle Organisation des Gehirns |x 2 |
920 | 1 | _ | |0 I:(DE-Juel1)JSC-20090406 |k JSC |l Jülich Supercomputing Center |x 3 |
980 | _ | _ | |a contb |
980 | _ | _ | |a VDB |
980 | _ | _ | |a contrib |
980 | _ | _ | |a I:(DE-Juel1)INM-6-20090406 |
980 | _ | _ | |a I:(DE-Juel1)IAS-6-20130828 |
980 | _ | _ | |a I:(DE-Juel1)INM-1-20090406 |
980 | _ | _ | |a I:(DE-Juel1)JSC-20090406 |
980 | _ | _ | |a UNRESTRICTED |
981 | _ | _ | |a I:(DE-Juel1)IAS-6-20130828 |
Library | Collection | CLSMajor | CLSMinor | Language | Author |
---|