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@ARTICLE{Postma:834661,
author = {Postma, Johannes Auke and Kuppe, Christian and Owen, Markus
R. and Mellor, Nathan and Griffiths, Marcus and Bennett,
Malcolm J. and Lynch, Jonathan P. and Watt, Michelle},
title = {{O}pen{S}im{R}oot: {W}idening the scope and application of
root architectural models},
journal = {The new phytologist},
volume = {215},
number = {3},
issn = {0028-646X},
address = {Oxford [u.a.]},
publisher = {Wiley-Blackwell},
reportid = {FZJ-2017-04565},
pages = {-},
year = {2017},
abstract = {Research Conducted and Rationale: OpenSimRoot is an open
sourced, functional-structural plant model and mathematical
description of root growth and function. We describe
OpenSimRoot and its functionality to broaden the benefits of
root modeling to the plant science community.Description:
OpenSimRoot is an extended version of SimRoot, established
to simulate root system architecture, nutrient acquisition,
and plant growth. OpenSimRoot has a plugin, modular
infrastructure, coupling single plant and crop stands to
soil nutrient, and water transport models. It estimates the
value of root traits for water and nutrient acquisition in
environments and plant species.Key results and unique
features: The flexible OpenSimRoot design allows upscaling
from root anatomy to plant community to estimate 1) resource
costs of developmental and anatomical traits, 2) trait
synergisms, 3) (inter species) root competition. OpenSimRoot
can model 3D images from MRI and X-ray CT of roots in soil.
New modules include: 1) soil water dependent water uptake
and xylem flow, 2) tiller formation, 3) evapotranspiration,
4) simultaneous simulation of mobile solutes, 5) mesh
refinement, and 6) root growth plasticity. Conclusion:
OpenSimRoot integrates plant phenotypic data with
environmental metadata to support experimental designs and
gain mechanistic understanding at system scales. Keywords:
Root system architecture, Functional Structural Plant Model,
OpenSimRoot, Root architectural traits, Simulation, Model
driven Phenotyping, Plant nutrition},
cin = {IBG-2},
ddc = {580},
cid = {I:(DE-Juel1)IBG-2-20101118},
pnm = {582 - Plant Science (POF3-582)},
pid = {G:(DE-HGF)POF3-582},
typ = {PUB:(DE-HGF)16},
UT = {WOS:000405197500031},
pubmed = {pmid:28653341},
doi = {10.1111/nph.14641},
url = {https://juser.fz-juelich.de/record/834661},
}