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000851327 1001_ $$0P:(DE-HGF)0$$aAli, Sharib$$b0$$eCorresponding author
000851327 245__ $$aRigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution
000851327 260__ $$aOrlando, Fla.$$bAcademic Press$$c2018
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000851327 520__ $$aTo understand the spatial organization as well as long- and short-range connections of the human brain at microscopic resolution, 3D reconstruction of histological sections is important. We approach this challenge by reconstructing series of unstained histological sections of multi-scale (1:3 μm and 64 μm) and multi-modal 3D polarized light imaging (3D-PLI) data. Since spatial coherence is lost during the sectioning procedure, image registration is the major step in 3D reconstruction. We propose a non-rigid registration method which comprises of a novel multi-modal similarity metric and an improved regularization scheme to cope with deformations inevitably introduced during the sectioning procedure, as well as a rigid registration approach using a robust similarity metric for improved initial alignment. We also introduce a multi-scale feature-based localization and registration approach for mapping of 1:3 μm sections to 64 μm sections and a scale-adaptive method that can handle challenging sections with large semi-global deformations due to tissue splits. We have applied our registration method to 126 consecutive sections of the temporal lobe of the human brain with 64 μm and 1:3 μm resolution. Each step of the registration method was quantitatively evaluated using 10 different sections and manually determined ground truth, and a quantitative comparison with previous methods was performed. Visual assessment of the reconstructed volumes and comparison with reference volumes confirmed the high quality of the registration result.
000851327 536__ $$0G:(DE-HGF)POF3-571$$a571 - Connectivity and Activity (POF3-571)$$cPOF3-571$$fPOF III$$x0
000851327 536__ $$0G:(EU-Grant)785907$$aHBP SGA2 - Human Brain Project Specific Grant Agreement 2 (785907)$$c785907$$fH2020-SGA-FETFLAG-HBP-2017$$x1
000851327 536__ $$0G:(DE-Juel1)HGF-SMHB-2013-2017$$aSMHB - Supercomputing and Modelling for the Human Brain (HGF-SMHB-2013-2017)$$cHGF-SMHB-2013-2017$$fSMHB$$x2
000851327 536__ $$0G:(DE-Juel1)jinm11_20171101$$a3D Reconstruction of Nerve Fibers in the Human, the Monkey and the Rodent Brain (jinm11_20171101)$$cjinm11_20171101$$f3D Reconstruction of Nerve Fibers in the Human, the Monkey and the Rodent Brain$$x3
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000851327 65017 $$0V:(DE-MLZ)GC-130-2016$$2V:(DE-HGF)$$aHealth and Life$$x0
000851327 7001_ $$0P:(DE-HGF)0$$aWörz, Stefan$$b1
000851327 7001_ $$0P:(DE-Juel1)131631$$aAmunts, Katrin$$b2$$ufzj
000851327 7001_ $$0P:(DE-HGF)0$$aEils, Roland$$b3
000851327 7001_ $$0P:(DE-Juel1)131632$$aAxer, Markus$$b4$$ufzj
000851327 7001_ $$0P:(DE-HGF)0$$aRohr, Karl$$b5$$eLast author
000851327 773__ $$0PERI:(DE-600)1471418-8$$a10.1016/j.neuroimage.2018.06.084$$p235-251$$tNeuroImage$$v181$$x1053-8119$$y2018
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000851327 8564_ $$uhttps://juser.fz-juelich.de/record/851327/files/YNIMG_15090_ALIetal-1.pdf$$yPublished on 2018-11-01. Available in OpenAccess from 2019-11-01.
000851327 8564_ $$uhttps://juser.fz-juelich.de/record/851327/files/YNIMG_15090_ALIetal-1.pdf?subformat=pdfa$$xpdfa$$yPublished on 2018-11-01. Available in OpenAccess from 2019-11-01.
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