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@ARTICLE{Beckers:858495,
author = {Beckers, Maximilian and Jakobi, Arjen J. and Sachse,
Carsten},
title = {{T}hresholding of cryo-{EM} density maps by false discovery
rate control},
journal = {IUCrJ},
volume = {6},
number = {1},
issn = {2052-2525},
address = {Chester},
reportid = {FZJ-2018-07367},
pages = {1-16},
year = {2019},
abstract = {Cryo-EM now commonly generates close-to-atomic resolution
as well as intermediate resolution maps from macromolecules
observed in isolation and in situ. Interpreting these maps
remains a challenging task owing to poor signal in the
highest resolution shells and the necessity to select a
threshold for density analysis. In order to facilitate this
process, a statistical framework for the generation of
confidence maps by multiple hypothesis testing and false
discovery rate (FDR) control has been developed. In this
way, three-dimensional confidence maps contain signal
separated from background noise in the form of local
detection rates of EM density values. It is demonstrated
that confidence maps and FDR-based thresholding can be used
for the interpretation of near-atomic resolution
single-particle structures as well as lower resolution maps
determined by subtomogram averaging. Confidence maps
represent a conservative way of interpreting molecular
structures owing to minimized noise. At the same time they
provide a detection error with respect to background noise,
which is associated with the density and is particularly
beneficial for the interpretation of weaker cryo-EM
densities in cases of conformational flexibility and lower
occupancy of bound molecules and ions in the structure.},
cin = {ER-C-3},
ddc = {530},
cid = {I:(DE-Juel1)ER-C-3-20170113},
pnm = {899 - ohne Topic (POF3-899)},
pid = {G:(DE-HGF)POF3-899},
typ = {PUB:(DE-HGF)16},
UT = {WOS:000455767600004},
pubmed = {pmid:30713700},
doi = {10.1107/S2052252518014434},
url = {https://juser.fz-juelich.de/record/858495},
}