% IMPORTANT: The following is UTF-8 encoded.  This means that in the presence
% of non-ASCII characters, it will not work with BibTeX 0.99 or older.
% Instead, you should use an up-to-date BibTeX implementation like “bibtex8” or
% “biber”.

@ARTICLE{Schwacke:859203,
      author       = {Schwacke, Rainer and Ponce-Soto, Gabriel Y. and Krause,
                      Kirsten and Bolger, Anthony M. and Arsova, Borjana and
                      Hallab, Asis and Gruden, Kristina and Stitt, Mark and
                      Bolger, Marie and Usadel, Björn},
      title        = {{M}ap{M}an4: a refined protein classification and
                      annotation framework applicable to multi-omics data
                      analysis},
      journal      = {Molecular plant},
      volume       = {12},
      number       = {6},
      issn         = {1674-2052},
      address      = {Oxford},
      publisher    = {Oxford Univ. Press},
      reportid     = {FZJ-2019-00093},
      pages        = {879-892},
      year         = {2019},
      abstract     = {Genome sequences from over 200 plant species have already
                      been published, with this number expected to increase
                      rapidly due to advances in sequencing technologies. Once a
                      new genome has been assembled and the genes identified, the
                      functional annotation of their proteins using ontologies is
                      of key importance as it places the sequencing data in a
                      biological context. Furthermore, in order to keep pace with
                      rapid production of genome sequences, this functional
                      annotation process must be fully automated.Here we present a
                      redesigned and significantly enhanced MapMan4 framework,
                      together with a revised version of the associated online
                      Mercator annotation tool. Compared to the original MapMan,
                      the new ontology has been expanded almost threefold and now
                      enforces stricter assignment rules. This ontology has been
                      incorporated into Mercator4, which has been upgraded to
                      reflect current knowledge across the land plant group and
                      thus provides protein annotations for all embryophytes with
                      a comparably high quality. The annotation process has been
                      optimized to allow a plant genome to be annotated in a
                      matter of minutes. The output results continue to be
                      compatible with the established MapMan desktop application.},
      cin          = {IBG-2},
      ddc          = {580},
      cid          = {I:(DE-Juel1)IBG-2-20101118},
      pnm          = {582 - Plant Science (POF3-582) / 583 - Innovative
                      Synergisms (POF3-583)},
      pid          = {G:(DE-HGF)POF3-582 / G:(DE-HGF)POF3-583},
      typ          = {PUB:(DE-HGF)16},
      pubmed       = {pmid:30639314},
      UT           = {WOS:000469954400011},
      doi          = {10.1016/j.molp.2019.01.003},
      url          = {https://juser.fz-juelich.de/record/859203},
}