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@INPROCEEDINGS{Oehrl:859933,
author = {Oehrl, Simon and Müller, Jan and Schnathmeier, Jan and
Eppler, Jochen Martin and Peyser, Alexander and Plesser,
Hans Ekkehard and Weyers, Benjamin and Hentschel, Bernd and
Kuhlen, Torsten and Vierjahn, Tom},
title = {{S}treaming {L}ive {N}euronal {S}imulation {D}ata into
{V}isualization and {A}nalysis},
volume = {11203},
address = {Cham},
publisher = {Springer International Publishing},
reportid = {FZJ-2019-00745},
isbn = {978-3-030-02464-2 (print)},
series = {Lecture Notes in Computer Science},
pages = {258 - 272},
year = {2018},
note = {Article attached has a 12 month embargo (until 25.1.2020):
https://www.springer.com/de/open-access/authors-rights/self-archiving-policy/2124},
comment = {High Performance Computing / Yokota, Rio (Editor)
[0000-0001-7573-7873] ; Cham : Springer International
Publishing, 2018, Chapter 18 ; ISSN: 0302-9743=1611-3349 ;
ISBN: 978-3-030-02464-2=978-3-030-02465-9 ;
doi:10.1007/978-3-030-02465-9},
booktitle = {High Performance Computing / Yokota,
Rio (Editor) [0000-0001-7573-7873] ;
Cham : Springer International
Publishing, 2018, Chapter 18 ; ISSN:
0302-9743=1611-3349 ; ISBN:
978-3-030-02464-2=978-3-030-02465-9 ;
doi:10.1007/978-3-030-02465-9},
abstract = {Neuroscientists want to inspect the data their simulations
are producing while these are still running. This will on
the one hand save them time waiting for results and
therefore insight. On the other, it will allow for more
efficient use of CPU time if the simulations are being run
on supercomputers. If they had access to the data being
generated, neuroscientists could monitor it and take
counter-actions, e.g., parameter adjustments, should the
simulation deviate too much from in-vivo observations or get
stuck.As a first step toward this goal, we devise an in situ
pipeline tailored to the neuroscientific use case. It is
capable of recording and transferring simulation data to an
analysis/visualization process, while the simulation is
still running. The developed libraries are made publicly
available as open source projects. We provide a
proof-of-concept integration, coupling the neuronal
simulator NEST to basic 2D and 3D
visualization.KeywordsNeuroscientific simulation In situ
visualization},
month = {Jun},
date = {2018-06-24},
organization = {ISC High Performance 2018, Frankfurt
(Germany), 24 Jun 2018 - 28 Jun 2018},
cin = {JSC / JARA-HPC},
cid = {I:(DE-Juel1)JSC-20090406 / $I:(DE-82)080012_20140620$},
pnm = {511 - Computational Science and Mathematical Methods
(POF3-511) / 574 - Theory, modelling and simulation
(POF3-574) / HBP SGA2 - Human Brain Project Specific Grant
Agreement 2 (785907) / SLNS - SimLab Neuroscience
(Helmholtz-SLNS)},
pid = {G:(DE-HGF)POF3-511 / G:(DE-HGF)POF3-574 /
G:(EU-Grant)785907 / G:(DE-Juel1)Helmholtz-SLNS},
typ = {PUB:(DE-HGF)8 / PUB:(DE-HGF)7},
UT = {WOS:000612998200022},
doi = {10.1007/978-3-030-02465-9_18},
url = {https://juser.fz-juelich.de/record/859933},
}