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@ARTICLE{Teijeiro:860718,
author = {Teijeiro, Carlos and Hammerschmidt, Thomas and Drautz, Ralf
and Sutmann, Godehard},
title = {{O}ptimized parallel simulations of analytic bond-order
potentials on hybrid shared/distributed memory with {MPI}
and {O}pen{MP}},
journal = {The international journal of high performance computing
applications},
volume = {32},
number = {2},
issn = {1741-2846},
address = {Thousand Oaks, Calif.},
publisher = {Sage Science Press},
reportid = {FZJ-2019-01383},
pages = {227 - 241},
year = {2019},
abstract = {Analytic bond-order potentials (BOPs) allow to obtain a
highly accurate description of interatomic interactions at a
reasonablecomputational cost. However, for simulations with
very large systems, the high memory demands require theuse
of a parallel implementation, which at the same time also
optimizes the use of computational resources. The
calculationsof analytic BOPs are performed for a restricted
volume around every atom and therefore have shown to be
wellsuited for a message passing interface (MPI)-based
parallelization based on a domain decomposition scheme, in
whichone process manages one big domain using the entire
memory of a compute node. On the basis of this approach,
thepresent work focuses on the analysis and enhancement of
its performance on shared memory by using OpenMP threadson
each MPI process, in order to use many cores per node to
speed up computations and minimize memory
bottlenecks.Different algorithms are described and their
corresponding performance results are presented, showing
significantperformance gains for highly parallel systems
with hybrid MPI/OpenMP simulations up to several thousands
of threads.},
cin = {JSC},
ddc = {004},
cid = {I:(DE-Juel1)JSC-20090406},
pnm = {511 - Computational Science and Mathematical Methods
(POF3-511)},
pid = {G:(DE-HGF)POF3-511},
typ = {PUB:(DE-HGF)16},
UT = {WOS:000458830600001},
doi = {10.1177/1094342017727060},
url = {https://juser.fz-juelich.de/record/860718},
}