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@ARTICLE{SchottVerdugo:863299,
author = {Schott-Verdugo, Stephan and Gohlke, Holger},
title = {{PACKMOL}-{M}emgen: {A} {S}imple-{T}o-{U}se, {G}eneralized
{W}orkflow for {M}embrane-{P}rotein–{L}ipid-{B}ilayer
{S}ystem {B}uilding},
journal = {Journal of chemical information and modeling},
volume = {59},
number = {6},
issn = {1549-960X},
address = {Washington, DC},
publisher = {American Chemical Society64160},
reportid = {FZJ-2019-03386},
pages = {2522-2528},
year = {2019},
abstract = {We present PACKMOL-Memgen, a simple-to-use, generalized
workflow for automated building of
membrane-protein–lipid-bilayer systems based on
open-source tools including Packmol, memembed, pdbremix, and
AmberTools. Compared with web-interface-based related tools,
PACKMOL-Memgen allows setup of multiple configurations of a
system in a user-friendly and efficient manner within
minutes. The generated systems are well-packed and thus
well-suited as starting configurations in MD simulations
under periodic boundary conditions, requiring only moderate
equilibration times. PACKMOL-Memgen is distributed with
AmberTools and runs on most computing platforms, and its
output can also be used for CHARMM or adapted to other
molecular-simulation packages.},
cin = {NIC / JSC / ICS-6},
ddc = {540},
cid = {I:(DE-Juel1)NIC-20090406 / I:(DE-Juel1)JSC-20090406 /
I:(DE-Juel1)ICS-6-20110106},
pnm = {511 - Computational Science and Mathematical Methods
(POF3-511) / Forschergruppe Gohlke $(hkf7_20170501)$ /
Molecular mechanisms underlying PlbF activation/deactivation
via dynamic association/dissociation $(hdd18_20170501)$},
pid = {G:(DE-HGF)POF3-511 / $G:(DE-Juel1)hkf7_20170501$ /
$G:(DE-Juel1)hdd18_20170501$},
typ = {PUB:(DE-HGF)16},
pubmed = {pmid:31120747},
UT = {WOS:000473116500003},
doi = {10.1021/acs.jcim.9b00269},
url = {https://juser.fz-juelich.de/record/863299},
}