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@ARTICLE{Zhou:873312,
      author       = {Zhou, Xiao-Ran and Schnepf, Andrea and Vanderborght, Jan
                      and Leitner, Daniel and Lacointe, André and Vereecken,
                      Harry and Lobet, Guillaume},
      title        = {{CP}lant{B}ox, a whole plant modelling framework for the
                      simulation of water and carbon related processes},
      journal      = {In silico plants},
      volume       = {2},
      number       = {1},
      issn         = {2517-5025},
      address      = {[Oxford]},
      publisher    = {Oxford University Press},
      reportid     = {FZJ-2020-00630},
      pages        = {diaa001},
      year         = {2020},
      abstract     = {The interaction between carbon and flows within the
                      vasculature is at the center of most growth and
                      developmental processes. Understanding how these fluxes
                      influence each other, and how they respond to heterogeneous
                      environmental conditions, is important to answer diverse
                      questions in agricultural and natural ecosystem sciences.
                      However, due to the high complexity of the plant-environment
                      system, specific tools are needed to perform such
                      quantitative analyses.Here we present CPlantBox, a whole
                      plant modelling framework based on the root system model
                      CRootBox. CPlantbox is capable of simulating the growth and
                      development of a variety of plant architectures (root and
                      shoot). In addition, the flexibility of CPlantBox enables
                      its coupling with external modeling tools. Here, we
                      connected the model to an existing mechanistic model of
                      water and carbon flows in the plant, PiafMunch.The
                      usefulness of the CPlantBox modelling framework is
                      exemplified in five case studies. Firstly, we illustrate the
                      range of plant structures that can be simulated using
                      CPlantBox. In the second example, we simulated diurnal
                      carbon and water flows, which corroborates published
                      experimental data. In the third case study, we simulated
                      impacts of heterogeneous environment on carbon and water
                      flows. Finally, we showed that our modelling framework can
                      be used to fit phloem pressure and flow speed to (published)
                      experimental data.The CPlantBox modelling framework is
                      open-source, highly accessible and flexible. Its aim is to
                      provide a quantitative framework for the understanding of
                      plant-environment interaction.},
      cin          = {IBG-3},
      ddc          = {004},
      cid          = {I:(DE-Juel1)IBG-3-20101118},
      pnm          = {255 - Terrestrial Systems: From Observation to Prediction
                      (POF3-255)},
      pid          = {G:(DE-HGF)POF3-255},
      typ          = {PUB:(DE-HGF)16},
      UT           = {WOS:000713308400001},
      doi          = {10.1093/insilicoplants/diaa001},
      url          = {https://juser.fz-juelich.de/record/873312},
}