001     888660
005     20240313103133.0
024 7 _ |a 2128/26710
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037 _ _ |a FZJ-2020-05102
041 _ _ |a English
100 1 _ |a van Albada, Sacha
|0 P:(DE-Juel1)138512
|b 0
|e Corresponding author
|u fzj
245 _ _ |a Usage and scaling of an open-source spiking multi-area model of monkey cortex
260 _ _ |c 2020
336 7 _ |a Preprint
|b preprint
|m preprint
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|s 1610440443_27352
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336 7 _ |a WORKING_PAPER
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336 7 _ |a Electronic Article
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336 7 _ |a preprint
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336 7 _ |a ARTICLE
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336 7 _ |a Output Types/Working Paper
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520 _ _ |a We are entering an age of ‘big’ computational neuroscience, in which neural network models are increasing in size and in numbers of underlying data sets. Consolidating the zoo of models into large-scale models simultaneously consistent with a wide range of data is only possible through the effort of large teams, which can be spread across multiple research institutions. To ensure that computational neuroscientists can build on each other’s work, it is important to make models publicly available as well-documented code. This chapter describes such an open-source model, which relates the connectivity structure of all vision-related cortical areas of the macaque monkey with their resting-state dynamics. We give a brief overview of how to use the executable model specification, which employs NEST as simulation engine, and show its runtime scaling. The solutions found serve as an example for organizing the workflow of future models from the raw experimental data to the visualization of the results, expose the challenges, and give guidance for the construction of ICT infrastructure for neuroscience.
536 _ _ |a 574 - Theory, modelling and simulation (POF3-574)
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536 _ _ |a 571 - Connectivity and Activity (POF3-571)
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536 _ _ |a HBP SGA3 - Human Brain Project Specific Grant Agreement 3 (945539)
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|c 945539
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536 _ _ |a HBP SGA2 - Human Brain Project Specific Grant Agreement 2 (785907)
|0 G:(EU-Grant)785907
|c 785907
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536 _ _ |a SPP 2041 347572269 - Integration von Multiskalen-Konnektivität und Gehirnarchitektur in einem supercomputergestützten Modell der menschlichen Großhirnrinde (347572269)
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536 _ _ |a Brain-Scale Simulations (jinb33_20121101)
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536 _ _ |a HBP SGA1 - Human Brain Project Specific Grant Agreement 1 (720270)
|0 G:(EU-Grant)720270
|c 720270
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536 _ _ |a Advanced Computing Architectures (aca_20190115)
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700 1 _ |a Pronold, Jari
|0 P:(DE-Juel1)165321
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700 1 _ |a van Meegen, Alexander
|0 P:(DE-Juel1)173607
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|u fzj
700 1 _ |a Diesmann, Markus
|0 P:(DE-Juel1)144174
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856 4 _ |u https://juser.fz-juelich.de/record/888660/files/arXiv%20preprint.pdf
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909 C O |o oai:juser.fz-juelich.de:888660
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910 1 _ |a Forschungszentrum Jülich
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910 1 _ |a University of Cologne
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910 1 _ |a Forschungszentrum Jülich
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910 1 _ |a Forschungszentrum Jülich
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910 1 _ |a Forschungszentrum Jülich
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913 1 _ |a DE-HGF
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|l Decoding the Human Brain
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|v Theory, modelling and simulation
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913 1 _ |a DE-HGF
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|l Decoding the Human Brain
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|v Connectivity and Activity
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914 1 _ |y 2020
915 _ _ |a OpenAccess
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920 _ _ |l yes
920 1 _ |0 I:(DE-Juel1)INM-6-20090406
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920 1 _ |0 I:(DE-Juel1)IAS-6-20130828
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|l Theoretical Neuroscience
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920 1 _ |0 I:(DE-Juel1)INM-10-20170113
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980 1 _ |a FullTexts
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980 _ _ |a I:(DE-Juel1)INM-10-20170113
981 _ _ |a I:(DE-Juel1)IAS-6-20130828


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