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@ARTICLE{Rother:890755,
author = {Rother, Dörte and Malzacher, Stephan},
title = {{C}omputer-aided enzymatic retrosynthesis},
journal = {Nature catalysis},
volume = {4},
number = {2},
issn = {2520-1158},
address = {[London]},
publisher = {Macmillan Publishers Limited, part of Springer Nature},
reportid = {FZJ-2021-01172},
pages = {92 - 93},
year = {2021},
abstract = {Biocatalysis makes use of nature’s ability to carry out
an incredible number of chemical reactions with excellent
selectivity. Since enzymes are biodegradable and operate
under mild reaction conditions without producing significant
amounts of toxic compounds, biocatalysis can be considered
an environmentally friendly alternative to traditional
synthesis strategies. The possibility of starting from
renewable raw materials is a further advantage when it comes
to developing more sustainable production strategies. New
enzymes or even entire classes of enzymes are discovered
every day. Some of them find their way to industrial
scale1,2. In addition, new bioinformatics tools — in
combination with molecular biology methods, the integration
of non-natural scaffolds and the introduction of complete
reaction sequences in microbial hosts — further extend the
applicability and diversity of enzymes as catalysts3,4,5.
Although, in the past, single-step biocatalysis was mainly
investigated in the academic field and applied in industry,
the complexity of the reaction pathways and the number of
publications with enzymatic multi-step processes are
constantly increasing. To get an overview of known
biocatalysis pathways/cascades or to get ideas for de novo
biotransformations, it has so far been necessary to consult
databases or to search in overviews, such as reviews or even
textbooks6,7. Recent developments in computer-aided
synthesis planning (CASP) facilitate and accelerate
synthesis design in synthetic biology as well as organic
chemistry. However, enzyme-catalysed steps are
under-represented in freely available and commercially
chemical CASP tools, and in synthetic biology CASPs the
promiscuity of enzymes is not yet fully embedded. This
situation has now changed. Writing in Nature Catalysis8,
Sabine Flitsch, Nicholas Turner and co-workers disclose an
intuitive tool for the computer-aided design of biocatalytic
cascades, RetroBioCat, which is freely available at
retrobiocat.com.},
cin = {IBG-1},
ddc = {540},
cid = {I:(DE-Juel1)IBG-1-20101118},
pnm = {2171 - Biological and environmental resources for
sustainable use (POF4-217)},
pid = {G:(DE-HGF)POF4-2171},
typ = {PUB:(DE-HGF)16},
UT = {WOS:000619812800002},
doi = {10.1038/s41929-021-00582-5},
url = {https://juser.fz-juelich.de/record/890755},
}