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@ARTICLE{Zhang:890796,
      author       = {Zhang, Weiyi and Luo, Cheng and Scossa, Federico and Zhang,
                      Qinghua and Usadel, Björn and Fernie, Alisdair R. and Mei,
                      Hanwei and Wen, Weiwei},
      title        = {{A} phased genome based on single sperm sequencing reveals
                      crossover pattern and complex relatedness in tea plants},
      journal      = {The plant journal},
      volume       = {105},
      number       = {1},
      issn         = {1365-313X},
      address      = {Oxford [u.a.]},
      publisher    = {Wiley-Blackwell},
      reportid     = {FZJ-2021-01204},
      pages        = {197 - 208},
      year         = {2021},
      note         = {Grant name:031B0779A (TEABAG - Ein pangenomischer Ansatz
                      zur Sicherung der Teeproduktion)031A536C (de.NBI -
                      Etablierungsphase: Leistungszentrum GCBN – Deutsches
                      BioGreenformatics-Netzwerk für Kulturpflanzen).},
      abstract     = {For diploid organisms that are highly heterozygous, a
                      phased haploid genome can greatly aid in functional genomic,
                      population genetic and breeding studies. Based on the genome
                      sequencing of 135 single sperm cells of the elite tea
                      cultivar ‘Fudingdabai’, we herein phased the genome of
                      Camellia sinensis, one of the most popular beverage crops
                      worldwide. High‐resolution genetic and recombination maps
                      of Fudingdabai were constructed, which revealed that
                      crossover (CO) positions were frequently located in the 5′
                      and 3′ ends of annotated genes, while CO distributions
                      across the genome were random. The low CO frequency in tea
                      can be explained by strong CO interference, and CO
                      simulation revealed the proportion of interference
                      insensitive CO ranged from $5.2\%$ to $11.7\%.$ We
                      furthermore developed a method to infer the relatedness
                      between tea accessions and detected complex kinship and
                      genetic signatures of 106 tea accessions. Among them, 59
                      accessions were closely related with Fudingdabai and 31 of
                      them were first‐degree relatives. We additionally
                      identified genes displaying allele specific expression
                      patterns between the two haplotypes of Fudingdabai and genes
                      displaying significantly differential expression levels
                      between Fudingdabai and other haplotypes. These results lay
                      the foundation for further investigation of genetic and
                      epigenetic factors underpinning the regulation of gene
                      expression and provide insights into the evolution of tea
                      plants as well as a valuable genetic resource for future
                      breeding efforts.},
      cin          = {IBG-4},
      ddc          = {580},
      cid          = {I:(DE-Juel1)IBG-4-20200403},
      pnm          = {217 - Für eine nachhaltige Bio-Ökonomie – von
                      Ressourcen zu Produkten (POF4-217)},
      pid          = {G:(DE-HGF)POF4-217},
      typ          = {PUB:(DE-HGF)16},
      pubmed       = {pmid:33118252},
      UT           = {WOS:000596452300001},
      doi          = {10.1111/tpj.15051},
      url          = {https://juser.fz-juelich.de/record/890796},
}