Home > Publications database > Targeted Free Energy Perturbation Revisited: Accurate Free Energies from Mapped Reference Potentials > print |
001 | 894955 | ||
005 | 20240625095128.0 | ||
024 | 7 | _ | |a 10.1021/acs.jpclett.1c02135 |2 doi |
024 | 7 | _ | |a 2128/29211 |2 Handle |
024 | 7 | _ | |a altmetric:114075759 |2 altmetric |
024 | 7 | _ | |a pmid:34555284 |2 pmid |
024 | 7 | _ | |a WOS:000707046300006 |2 WOS |
037 | _ | _ | |a FZJ-2021-03496 |
082 | _ | _ | |a 530 |
100 | 1 | _ | |a Parrinello, Michele |0 P:(DE-HGF)0 |b 0 |e Corresponding author |
245 | _ | _ | |a Targeted Free Energy Perturbation Revisited: Accurate Free Energies from Mapped Reference Potentials |
260 | _ | _ | |a Washington, DC |c 2021 |b ACS |
336 | 7 | _ | |a article |2 DRIVER |
336 | 7 | _ | |a Output Types/Journal article |2 DataCite |
336 | 7 | _ | |a Journal Article |b journal |m journal |0 PUB:(DE-HGF)16 |s 1638254090_17592 |2 PUB:(DE-HGF) |
336 | 7 | _ | |a ARTICLE |2 BibTeX |
336 | 7 | _ | |a JOURNAL_ARTICLE |2 ORCID |
336 | 7 | _ | |a Journal Article |0 0 |2 EndNote |
520 | _ | _ | |a We present an approach that extends the theory of targeted free energy perturbation (TFEP) to calculate free energy differences and free energy surfaces at an accurate quantum mechanical level of theory from a cheaper reference potential. The convergence is accelerated by a mapping function that increases the overlap between the target and the reference distributions. Building on recent work, we show that this map can be learned with a normalizing flow neural network, without requiring simulations with the expensive target potential but only a small number of single-point calculations, and, crucially, avoiding the systematic error that was found previously. We validate the method by numerically evaluating the free energy difference in a system with a double-well potential and by describing the free energy landscape of a simple chemical reaction in the gas phase. |
536 | _ | _ | |a 5241 - Molecular Information Processing in Cellular Systems (POF4-524) |0 G:(DE-HGF)POF4-5241 |c POF4-524 |x 0 |f POF IV |
536 | _ | _ | |a DFG project 291198853 - FOR 2518: Funktionale Dynamik von Ionenkanälen und Transportern - DynIon - |0 G:(GEPRIS)291198853 |c 291198853 |x 1 |
588 | _ | _ | |a Dataset connected to DataCite |
700 | 1 | _ | |a Rizzi, Andrea |0 P:(DE-Juel1)180791 |b 1 |u fzj |
700 | 1 | _ | |a Carloni, Paolo |0 P:(DE-Juel1)145614 |b 2 |e Corresponding author |
773 | _ | _ | |a 10.1021/acs.jpclett.1c02135 |g Vol. 12, no. 39, p. 9449 - 9454 |0 PERI:(DE-600)2522838-9 |n 39 |p 9449–9454 |t The journal of physical chemistry letters |v 12 |y 2021 |x 1948-7185 |
856 | 4 | _ | |u https://juser.fz-juelich.de/record/894955/files/Invoice_APC600249130.pdf |
856 | 4 | _ | |y OpenAccess |z StatID:(DE-HGF)0510 |u https://juser.fz-juelich.de/record/894955/files/Rizzi-etal-JPCL-2021.pdf |
856 | 4 | _ | |y Restricted |z StatID:(DE-HGF)0599 |u https://juser.fz-juelich.de/record/894955/files/acs.jpclett.1c02135.pdf |
909 | C | O | |o oai:juser.fz-juelich.de:894955 |p openaire |p open_access |p OpenAPC |p driver |p VDB |p openCost |p dnbdelivery |
910 | 1 | _ | |a Forschungszentrum Jülich |0 I:(DE-588b)5008462-8 |k FZJ |b 1 |6 P:(DE-Juel1)180791 |
910 | 1 | _ | |a Forschungszentrum Jülich |0 I:(DE-588b)5008462-8 |k FZJ |b 2 |6 P:(DE-Juel1)145614 |
913 | 1 | _ | |a DE-HGF |b Key Technologies |l Natural, Artificial and Cognitive Information Processing |1 G:(DE-HGF)POF4-520 |0 G:(DE-HGF)POF4-524 |3 G:(DE-HGF)POF4 |2 G:(DE-HGF)POF4-500 |4 G:(DE-HGF)POF |v Molecular and Cellular Information Processing |9 G:(DE-HGF)POF4-5241 |x 0 |
914 | 1 | _ | |y 2021 |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0200 |2 StatID |b SCOPUS |d 2021-01-27 |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0300 |2 StatID |b Medline |d 2021-01-27 |
915 | _ | _ | |a JCR |0 StatID:(DE-HGF)0100 |2 StatID |b J PHYS CHEM LETT : 2019 |d 2021-01-27 |
915 | _ | _ | |a IF >= 5 |0 StatID:(DE-HGF)9905 |2 StatID |b J PHYS CHEM LETT : 2019 |d 2021-01-27 |
915 | _ | _ | |a WoS |0 StatID:(DE-HGF)0113 |2 StatID |b Science Citation Index Expanded |d 2021-01-27 |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0150 |2 StatID |b Web of Science Core Collection |d 2021-01-27 |
915 | _ | _ | |a OpenAccess |0 StatID:(DE-HGF)0510 |2 StatID |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)1150 |2 StatID |b Current Contents - Physical, Chemical and Earth Sciences |d 2021-01-27 |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0160 |2 StatID |b Essential Science Indicators |d 2021-01-27 |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0199 |2 StatID |b Clarivate Analytics Master Journal List |d 2021-01-27 |
920 | _ | _ | |l yes |
920 | 1 | _ | |0 I:(DE-Juel1)IAS-5-20120330 |k IAS-5 |l Computational Biomedicine |x 0 |
920 | 1 | _ | |0 I:(DE-Juel1)INM-9-20140121 |k INM-9 |l Computational Biomedicine |x 1 |
980 | _ | _ | |a journal |
980 | _ | _ | |a VDB |
980 | _ | _ | |a UNRESTRICTED |
980 | _ | _ | |a I:(DE-Juel1)IAS-5-20120330 |
980 | _ | _ | |a I:(DE-Juel1)INM-9-20140121 |
980 | _ | _ | |a APC |
980 | 1 | _ | |a APC |
980 | 1 | _ | |a FullTexts |
Library | Collection | CLSMajor | CLSMinor | Language | Author |
---|