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@ARTICLE{Rosenbach:902421,
author = {Rosenbach, Hannah and Borggräfe, Jan and Victor, Julian
and Wuebben, Christine and Schiemann, Olav and Hoyer,
Wolfgang and Steger, Gerhard and Etzkorn, Manuel and Span,
Ingrid},
title = {{I}nfluence of monovalent metal ions on metal binding and
catalytic activity of the 10–23 {DNA}zyme},
journal = {Biological chemistry},
volume = {402},
number = {1},
issn = {1431-6730},
address = {Berlin [u.a.]},
publisher = {de Gruyter},
reportid = {FZJ-2021-04243},
pages = {99 - 111},
year = {2020},
abstract = {Deoxyribozymes (DNAzymes) are single-stranded DNA molecules
that catalyze a broad range of chemical reactions. The
10–23 DNAzyme catalyzes the cleavage of RNA strands and
can be designed to cleave essentially any target RNA, which
makes it particularly interesting for therapeutic and
biosensing applications. The activity of this DNAzyme in
vitro is considerably higher than in cells, which was
suggested to be a result of the low intracellular
concentration of bioavailable divalent cations. While the
interaction of the 10–23 DNAzyme with divalent metal ions
was studied extensively, the influence of monovalent metal
ions on its activity remains poorly understood. Here, we
characterize the influence of monovalent and divalent
cations on the 10–23 DNAzyme utilizing functional and
biophysical techniques. Our results show that Na+ and K+
affect the binding of divalent metal ions to the DNAzyme:RNA
complex and considerably modulate the reaction rates of RNA
cleavage. We observe an opposite effect of high levels of
Na+ and K+ concentrations on Mg2+- and Mn2+-induced
reactions, revealing a different interplay of these metals
in catalysis. Based on these findings, we propose a model
for the interaction of metal ions with the DNAzyme:RNA
complex.},
cin = {IBI-7},
ddc = {570},
cid = {I:(DE-Juel1)IBI-7-20200312},
pnm = {552 - Engineering Cell Function (POF3-552)},
pid = {G:(DE-HGF)POF3-552},
typ = {PUB:(DE-HGF)16},
UT = {WOS:000596049300010},
doi = {10.1515/hsz-2020-0207},
url = {https://juser.fz-juelich.de/record/902421},
}