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@ARTICLE{Blagodatskaya:904493,
      author       = {Blagodatskaya, Evgenia and Tarkka, Mika and Knief, Claudia
                      and Koller, Robert and Peth, Stephan and Schmidt, Volker and
                      Spielvogel, Sandra and Uteau, Daniel and Weber, Matthias and
                      Razavi, Bahar S.},
      title        = {{B}ridging {M}icrobial {F}unctional {T}raits {W}ith
                      {L}ocalized {P}rocess {R}ates at {S}oil {I}nterfaces},
      journal      = {Frontiers in microbiology},
      volume       = {12},
      issn         = {1664-302X},
      address      = {Lausanne},
      publisher    = {Frontiers Media},
      reportid     = {FZJ-2021-06063},
      pages        = {625697},
      year         = {2021},
      abstract     = {In this review, we introduce microbially-mediated soil
                      processes, players, their functional traits, and their links
                      to processes at biogeochemical interfaces [e.g.,
                      rhizosphere, detritusphere, (bio)-pores, and aggregate
                      surfaces]. A conceptual view emphasizes the central role of
                      the rhizosphere in interactions with other biogeochemical
                      interfaces, considering biotic and abiotic dynamic drivers.
                      We discuss the applicability of three groups of traits based
                      on microbial physiology, activity state, and genomic
                      functional traits to reflect microbial growth in soil. The
                      sensitivity and credibility of modern molecular approaches
                      to estimate microbial-specific growth rates require further
                      development. A link between functional traits determined by
                      physiological (e.g., respiration, biomarkers) and genomic
                      (e.g., genome size, number of ribosomal gene copies per
                      genome, expression of catabolic versus biosynthetic genes)
                      approaches is strongly affected by environmental conditions
                      such as carbon, nutrient availability, and ecosystem type.
                      Therefore, we address the role of soil physico-chemical
                      conditions and trophic interactions as drivers of
                      microbially-mediated soil processes at relevant scales for
                      process localization. The strengths and weaknesses of
                      current approaches (destructive, non-destructive, and
                      predictive) for assessing process localization and the
                      corresponding estimates of process rates are linked to the
                      challenges for modeling microbially-mediated processes in
                      heterogeneous soil microhabitats. Finally, we introduce a
                      conceptual self-regulatory mechanism based on the flexible
                      structure of active microbial communities. Microbial taxa
                      best suited to each successional stage of substrate
                      decomposition become dominant and alter the community
                      structure. The rates of decomposition of organic compounds,
                      therefore, are dependent on the functional traits of
                      dominant taxa and microbial strategies, which are selected
                      and driven by the local environment.},
      cin          = {IBG-2},
      ddc          = {570},
      cid          = {I:(DE-Juel1)IBG-2-20101118},
      pnm          = {2171 - Biological and environmental resources for
                      sustainable use (POF4-217)},
      pid          = {G:(DE-HGF)POF4-2171},
      typ          = {PUB:(DE-HGF)16},
      pubmed       = {pmid:34777265},
      UT           = {WOS:000717714700001},
      doi          = {10.3389/fmicb.2021.625697},
      url          = {https://juser.fz-juelich.de/record/904493},
}