IBG-5

⇧ IBG ⇧

Recent Publications

All known publications ...
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http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Sczyrba, A. (Corresponding author)FZJ*
Metagenomics-Toolkit: The Flexible and Efficient Cloud-Based Metagenomics Workflow featuring Machine Learning-Enabled Resource Allocation
NAR: genomics and bioinformatics 7(3), lqaf093 (2025) [10.1093/nargab/lqaf093]2025   Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Dataset Alexander SczyrbaFZJ* ; Peter BelmannFZJ* ; Benedikt OsterholzFZJ* ; Nils KleinböltingFZJ* ; Alfred Pühler ; Andreas Schlüter
Replication Data for: Metagenomics-Toolkit: the flexible and efficient cloud-based metagenomics workflow featuring machine learning-enabled resource allocation
[10.26165/juelich-data/kxdwii] BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Klein, J. ; Lam, H. ; Mak, T. D. ; Bittremieux, W. ; Perez-Riverol, Y. ; Gabriels, R. ; Shofstahl, J. ; Hecht, H. ; Binz, P.-A. ; Kawano, S. ; Van Den Bossche, T. ; Carver, J. ; Neely, B. A. ; Mendoza, L. ; Suomi, T. ; Claeys, T. ; Payne, T. ; Schulte, D. ; Sun, Z. ; Hoffmann, N.FZJ* ; Zhu, Y. ; Neumann, S. ; Jones, A. R. ; Bandeira, N. ; Vizcaíno, J. A. ; Deutsch, E. W.
The Proteomics Standards Initiative Standardized Formats for Spectral Libraries and Fragment Ion Peak Annotations: mzSpecLib and mzPAF
Analytical chemistry 96(46), 18491 - 18501 (2024) [10.1021/acs.analchem.4c04091]2024   Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Lick, S. ; Wibberg, D.FZJ* ; Busche, T. ; Blom, J. ; Grimmler, C. ; Goesmann, A. ; Kalinowski, J.
Pseudomonas kulmbachensis sp. nov. and Pseudomonas paraveronii sp. nov., originating from chilled beef and chicken breast
International journal of systematic and evolutionary microbiology 74(4), 1 (2024) [10.1099/ijsem.0.006293]2024 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Berckx, F. ; Van Nguyen, T. ; Hilker, R. ; Wibberg, D.FZJ* ; Battenberg, K. ; Kalinowski, J. ; Berry, A. ; Pawlowski, K. (Corresponding author)
Host dependent specialized metabolism of nitrogen export in actinorhizal nodules induced by Frankia cluster-2
The journal of experimental botany 76(4), 1164–1178 (2024) [10.1093/jxb/erae446]2024   Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Torta, F. ; Hoffmann, N.FZJ* ; Burla, B. ; et al
Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
Nature Communications 15(1), 8562 (2024) [10.1038/s41467-024-52087-x]2024   Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Kopczynski, D. (Corresponding author) ; Ejsing, C. S. ; McDonald, J. G. ; Bamba, T. ; Baker, E. S. ; Bertrand-Michel, J. ; Brügger, B. ; Coman, C. ; Ellis, S. R. ; Garrett, T. J. ; Griffiths, W. J. ; Guan, X. L. ; Han, X. ; Höring, M. ; Holčapek, M. ; Hoffmann, N.FZJ* ; Huynh, K. ; Lehmann, R. ; Jones, J. W. ; Kaddurah-Daouk, R. ; Köfeler, H. C. ; Meikle, P. J. ; Metz, T. O. ; O’Donnell, V. B. ; Saigusa, D. ; Schwudke, D. ; Shevchenko, A. ; Torta, F. ; Vizcaíno, J. A. ; Welti, R. ; Wenk, M. R. ; Wolrab, D. ; Xia, Y. ; Ekroos, K. ; Ahrends, R. ; Liebisch, G.
The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data
Journal of lipid research 65(9), 100621 - (2024) [10.1016/j.jlr.2024.100621]2024   Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Bielow, C. ; Hoffmann, N.FZJ* ; Jimenez-Morales, D. ; Van Den Bossche, T. ; Vizcaíno, J. A. ; Tabb, D. L. ; Bittremieux, W. ; Walzer, M.
Communicating Mass Spectrometry Quality Information in mzQC with Python, R, and Java
Journal of the American Society for Mass Spectrometry 35(8), 1875–1882 (2024) [10.1021/jasms.4c00174]2024   Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Helm, T.FZJ* ; Stausberg, T. ; Previati, M. ; Ernst, P.FZJ* ; Klein, B.FZJ* ; Busche, T. ; Kalinowski, J. ; Wibberg, D.FZJ* ; Wiechert, W.FZJ* ; Claerhout, L. ; Wierckx, N.FZJ* ; Noack, S. (Corresponding author)FZJ*
Itaconate Production from Crude Substrates with U. maydis: Scale-up of an Industrially Relevant Bioprocess
Microbial cell factories 23(1), 29 (2024) [10.1186/s12934-024-02295-3]2024   Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Witting, M. (First author) ; Malik, A. ; Leach, A. ; Bridge, A. ; Aimo, L. ; Conroy, M. J. ; O’Donnell, V. B. ; Hoffmann, N.FZJ* ; Kopczynski, D. ; Giacomoni, F. ; Paulhe, N. ; Gassiot, A. C. ; Poupin, N. ; Jourdan, F. ; Bertrand-Michel, J. (Corresponding author)
Challenges and perspectives for naming lipids in the context of lipidomics
Metabolomics 20(1), 15 (2024) [10.1007/s11306-023-02075-x]2024   Files BibTeX | EndNote: XML, Text | RIS

All known publications ...
Download: BibTeX | EndNote XML,  Text | RIS |