Software FZJ-2022-02848

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Arbor Library v0.7

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2022

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Abstract: What's Changed Neuroscience/documentation prep extracellular potentials tutorial. Updated corresponding example by @espenhgn in #1825 Add documentation on faster NMODL. by @thorstenhater in #1840 Add tstop doc in recipe API doc by @schmitts in #1852 Use list comprehension to speed up creation of connections by @schmitts in #1864 Support markers in neurolucida ascii files by @bcumming in #1867 simplified create_polygon function in lfpykit example by @espenhgn in #1881 Better key for the lfpykit intersphinx mapping by @Helveg in #1878 Sort (in python) the mechanism names (for convenience). by @thorstenhater in #1882 Always emit weight expression. by @thorstenhater in #1875 Add support for epoch callbacks by @bcumming in #1873 Add introspection for global properties. by @thorstenhater in #1890 Add point probes to demo by @schmitts in #1891 Tut/use avail threads by @brenthuisman in #1900 Allen tutorial by @brenthuisman in #1781 New policy 'round_robin_halt' by @jlubo in #1868 Axial Diffusion by @thorstenhater in #1729 Add some convenience to simulation creation. by @thorstenhater in #1904 Predefine SWC Regions. by @thorstenhater in #1911 Diffusion Example Improvements (and a bit of clean-up) by @thorstenhater in #1914 Inhomogeneous parameters by @AdhocMan in #1887 Fix line numbers in tutorials and assorted doc corrections by @brenthuisman in #1917 Core Be more lenient when accepting args to file I/O by @thorstenhater in #1819 modcc: generate missing node_index read needed for reading time t in the mechanisms by @noraabiakar in #1866 Add Developer Documentation by @thorstenhater in #1639 Isolate external catalogues from libarbor.a. by @thorstenhater in #1837 Build, testing, CI Build Python 3.10 binary wheels. Add v0.6 to spackfile. by @brenthuisman in #1817 export API by @boeschf in #1824 export doc by @boeschf in #1849 Include CMAKE+CUDA iff NVCC is needed. by @thorstenhater in #1855 Bit more on Spack, fix in tutorial by @brenthuisman in #1838 json submodule added by @brenthuisman in #1871 Fix a bug where Debian/Ubuntu's Python malfunctions by @brenthuisman in #1894 Have dependency version policy by @brenthuisman in #1865 random123 submodule added by @brenthuisman in #1872 Fix tool installation paths. by @thorstenhater in #1905 Adopt Black for Python. by @thorstenhater in #1906 add cmake checks for non-bundled random123 by @bcumming in #1907 Temporarily disable A64FX CI by @bcumming in #1910 Adopt flake8 by @thorstenhater in #1908 Move Python build to pyproject.toml , bump Python minver to 3.7, fix macos wheel generation by @brenthuisman in #1916 Weekly CI Python wheel build pushes to Test.PyPI.org by @brenthuisman in #1921 Fixes, optimization Users may not give dt < 0. by @thorstenhater in #1821 Fix ubenches compilation errors by @noraabiakar in #1828 death test: wrong signal by @boeschf in #1858 Make brunel.py setup faster. by @thorstenhater in #1854 add a better error. by @thorstenhater in #1846 Fix load_component for label-dict by @noraabiakar in #1859 Found out the hard way that this is still needed :/ by @thorstenhater in #1860 Elide memcpy where not needed by @thorstenhater in #1863 Bug fix: Fix voltage vector size in threshold_watcher contstructor by @noraabiakar in #1820 remove test statements for move ctor by @boeschf in #1899 Code Quality: PVS Studio Finds by @thorstenhater in #1901 Two context decomp swaps were forgotten by @brenthuisman in #1912 New Contributors @jlubo made their first contribution in #1868 @AdhocMan made their first contribution in #1887

Keyword(s): neuroscience ; computational neuroscience ; morpholically detailed simulator


Contributing Institute(s):
  1. Jülich Supercomputing Center (JSC)
Research Program(s):
  1. 5111 - Domain-Specific Simulation & Data Life Cycle Labs (SDLs) and Research Groups (POF4-511) (POF4-511)

Appears in the scientific report 2022
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 Record created 2022-07-25, last modified 2022-07-26


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