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@MISC{Schiffer:911542,
author = {Schiffer, Christian and Bruno, Ariane and Amunts, Katrin
and Dickscheid, Timo},
title = {{U}ltrahigh-resolution 3{D} cytoarchitectonic map of {A}rea
{MFG}1 of the human anterior dorsolateral prefrontal cortex
({DLPFC}) created by a {D}eep-{L}earning assisted workflow
(v1)},
publisher = {EBRAINS},
reportid = {FZJ-2022-04802},
year = {2022},
abstract = {This dataset contains automatically created detailed map of
the area MFG1 of the human anterior dorsolateral prefrontal
cortex (DLPFC) in the BigBrain dataset. The mappings were
created using Deep Convolutional Neural Networks based on
Schiffer et al. 2021, which were trained on delineations on
at least every 30th section created based on Bruno et al.
2022. Mappings are available on every section. Their quality
was observed by a trained neuroscientist to exclude sections
with low-quality results from further processing. Automatic
mappings were transformed to the 3D reconstructed BigBrain
space using transformations used in Amunts et al. 2013,
which were provided by Claude Lepage (McGill). Mappings on
individual sections were used to assemble 3D volumes of all
areas. Low-quality results were replaced by interpolation
between nearest neighboring sections. The volumes were then
smoothed using a 3D median filter, and the largest connected
components were identified to remove false positive results
of the classification algorithm. The dataset consists of an
HDF5 file containing the volume in RAS dimension ordering
(20-micron isotropic resolution, dataset “volume”) and
an affine transformation matrix (dataset “affine”). An
additional dataset, $“interpolation_info”,$ contains an
integer vector with an integer value for each section which
indicates if a section was replaced by interpolation due to
low-quality results (value 2) or not (value 1). Due to the
large size of the volume, it is recommended to view the data
online using the provided viewer link.},
keywords = {Neuroscience (Other)},
cin = {INM-1},
cid = {I:(DE-Juel1)INM-1-20090406},
pnm = {5254 - Neuroscientific Data Analytics and AI (POF4-525) /
HBP SGA3 - Human Brain Project Specific Grant Agreement 3
(945539)},
pid = {G:(DE-HGF)POF4-5254 / G:(EU-Grant)945539},
typ = {PUB:(DE-HGF)32},
doi = {10.25493/JN40-NCG},
url = {https://juser.fz-juelich.de/record/911542},
}