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@INBOOK{Williamson:917012,
author = {Pommier, Cyril and Coppens, Frederik and
Ćwiek-Kupczyńska, Hanna and Faria, Daniel and Beier,
Sebastian and Miguel, Célia and Michotey, Célia and
D’Anna, Flora and Owen, Stuart and Gruden, Kristina},
editor = {Williamson, Hugh F. and Leonelli, Sabina},
title = {{P}lant {S}cience {D}ata {I}ntegration, from {B}uilding
{C}ommunity {S}tandards to {D}efining a {C}onsistent {D}ata
{L}ifecycle},
address = {Cham},
publisher = {Springer International Publishing},
reportid = {FZJ-2023-00278},
year = {2023},
comment = {Towards Responsible Plant Data Linkage: Data Challenges for
Agricultural Research and Development / Williamson, Hugh F.
(Editor) ; Cham : Springer International Publishing, 2023,
Chapter 8 ; ISBN: 978-3-031-13275-9 ;
doi:10.1007/978-3-031-13276-6},
booktitle = {Towards Responsible Plant Data
Linkage: Data Challenges for
Agricultural Research and Development /
Williamson, Hugh F. (Editor) ; Cham :
Springer International Publishing,
2023, Chapter 8 ; ISBN:
978-3-031-13275-9 ;
doi:10.1007/978-3-031-13276-6},
abstract = {FAIR (Findable, Accessible, Interoperable, Reusable) data
principles for plant research build upon experience from
other life science domains such as genomics. But plant
specificities, e.g. plant-environment interactions or
phenotypes, require tailored solutions. Major global players
have joined forces to answer that challenge with the Minimal
Information About a Plant Phenotyping Experiment (MIAPPE,
www.miappe.org) that handles general metadata organization
and its companion web service API, the Breeding API
(www.brapi.org). Both rely on two established data
standards, the MultiCrop Passport Descriptors (MCPD) for
identification of plant genetic resources and the Crop
Ontology (www.cropontology.org) for trait documentation.
Researcher communities’ coordination and collaborative
approaches have enabled the success and adoption of MIAPPE
and led to a general data lifecycle description by ELIXIR
Plant Sciences Community to identify gaps and needed
developments. A priority has been placed on addressing the
“first mile” of data publishing, i.e. the gathering and
documentation of data by the researcher, which enables
relevant data findability and reusability. Here we describe
the existing ecosystem of tools and standards for plant
scientists as well as their history, including their
convergence through the use of MIAPPE for describing
genotyping datasets.},
typ = {PUB:(DE-HGF)7},
doi = {10.1007/978-3-031-13276-6_8},
url = {https://juser.fz-juelich.de/record/917012},
}