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000917333 0247_ $$2doi$$a10.1021/acschemneuro.2c00102
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000917333 037__ $$aFZJ-2023-00561
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000917333 1001_ $$0P:(DE-HGF)0$$aLeguizamon Herrera, Vivian Lorena$$b0
000917333 245__ $$aInteraction of Therapeutic d -Peptides with Aβ42 Monomers, Thermodynamics, and Binding Analysis
000917333 260__ $$aWashington, DC$$bACS Publ.$$c2022
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000917333 520__ $$aThe aggregation of the amyloid-β (Aβ) peptide is a major hallmark of Alzheimer’s disease. This peptide can aggregate into oligomers, proto-fibrils, and mature fibrils, which eventually assemble into amyloid plaques. The peptide monomers are the smallest assembly units and play an important role in most of the individual processes involved in amyloid fibril formation, such as primary and secondary nucleation and elongation. Several d-peptides have been confirmed as promising candidates to inhibit the aggregation of Aβ into toxic oligomers and fibrils by specifically interacting with monomeric species. In this work, we elucidate the structural interaction and thermodynamics of binding between three d-peptides (D3, ANK6, and RD2) and Aβ42 monomers by means of enhanced molecular dynamics simulations. Our study derives thermodynamic energies in good agreement with experimental values and suggests that there is an enhanced binding for D3 and ANK6, which leads to more stable complexes than for RD2. The binding of D3 to Aβ42 is shown to be weakly exothermic and mainly entropically driven, whereas the complex formation between the ANK6 and RD2 with the Aβ42 free monomer is weakly endothermic. In addition, the changes in the solvent-accessible surface area and the radius of gyration support that the binding between Aβ42 and d-peptides is mainly driven by electrostatic and hydrophobic interactions and leads to more compact conformations.
000917333 536__ $$0G:(DE-HGF)POF4-5244$$a5244 - Information Processing in Neuronal Networks (POF4-524)$$cPOF4-524$$fPOF IV$$x0
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000917333 7001_ $$00000-0003-1161-3622$$aBuell, Alexander K.$$b1
000917333 7001_ $$0P:(DE-Juel1)132029$$aWillbold, Dieter$$b2$$eCorresponding author
000917333 7001_ $$0P:(DE-Juel1)151182$$aBarz, Bogdan$$b3
000917333 773__ $$0PERI:(DE-600)2528493-9$$a10.1021/acschemneuro.2c00102$$gVol. 13, no. 11, p. 1638 - 1650$$n11$$p1638 - 1650$$tACS chemical neuroscience$$v13$$x1948-7193$$y2022
000917333 8564_ $$uhttps://juser.fz-juelich.de/record/917333/files/acschemneuro.2c00102-1.pdf
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000917333 9141_ $$y2022
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